6FVY

26S proteasome, s6 state


Structural Similarities for the Entities in PDB 6FVY

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A,a

Description: Proteasome subunit alpha type-1 protein | Length: 244

No structure alignment results are available for 6FVY.A, 6FVY.a explicitly.

These chains are represented by chain 5LE5.G which has more than 50% sequence identity.

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Entity #10 | Chains 3,j

Description: Proteasome subunit beta type-3 protein | Length: 204

No structure alignment results are available for 6FVY.3, 6FVY.j explicitly.

These chains are represented by chain 5LE5.I which has more than 50% sequence identity.

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Entity #11 | Chains 4,k

Description: Proteasome subunit beta type-4 protein | Length: 195

No structure alignment results are available for 6FVY.4, 6FVY.k explicitly.

These chains are represented by chain 5LE5.J which has more than 40% sequence identity.

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Entity #12 | Chains 5,l

Description: Proteasome subunit beta type-5 protein | Length: 212

No structure alignment results are available for 6FVY.5, 6FVY.l explicitly.

These chains are represented by chain 5LE5.K which has more than 70% sequence identity.

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Entity #13 | Chains 6,m

Description: Proteasome subunit beta type-6 protein | Length: 222

No structure alignment results are available for 6FVY.6, 6FVY.m explicitly.

These chains are represented by chain 4R17.L which is 100% sequence identical.

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Entity #14 | Chains 7,n

Description: Proteasome subunit beta type-7 protein | Length: 232

No structure alignment results are available for 6FVY.7, 6FVY.n explicitly.

These chains are represented by chain 4R17.M which is 100% sequence identical.

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Entity #15 | Chains W

Description: 26S proteasome regulatory subunit RPN10 protein | Length: 197

No structure alignment results are available for 6FVY.W explicitly.

It is represented by chain 2X5N.A which has more than 40% sequence identity.

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Entity #16 | Chains V

Description: Ubiquitin carboxyl-terminal hydrolase RPN11 protein | Length: 289

No structure alignment results are available for 6FVY.V explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains T

Description: 26S proteasome regulatory subunit RPN12 protein | Length: 266

No structure alignment results are available for 6FVY.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains X

Description: 26S proteasome regulatory subunit RPN13 protein | Length: 127

No structure alignment results are available for 6FVY.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains Y

Description: 26S proteasome complex subunit SEM1 protein | Length: 89

No structure alignment results are available for 6FVY.Y explicitly.

It is represented by chain 5UBP.C which is 100% sequence identical.

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Entity #2 | Chains B,b

Description: Proteasome subunit alpha type-2 protein | Length: 248

No structure alignment results are available for 6FVY.B, 6FVY.b explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #20 | Chains Z

Description: 26S proteasome regulatory subunit RPN1 protein | Length: 970

No structure alignment results are available for 6FVY.Z explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains N

Description: 26S proteasome regulatory subunit RPN2 protein | Length: 922

No structure alignment results are available for 6FVY.N explicitly.

It is represented by chain 4ADY.A which is 100% sequence identical.

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Entity #22 | Chains S

Description: 26S proteasome regulatory subunit RPN3 protein | Length: 475

No structure alignment results are available for 6FVY.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains P

Description: 26S proteasome regulatory subunit RPN5 protein | Length: 440

No structure alignment results are available for 6FVY.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains Q

Description: 26S proteasome regulatory subunit RPN6 protein | Length: 434

No structure alignment results are available for 6FVY.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains R

Description: 26S proteasome regulatory subunit RPN7 protein | Length: 405

No structure alignment results are available for 6FVY.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #26 | Chains U

Description: 26S proteasome regulatory subunit RPN8 protein | Length: 304

No structure alignment results are available for 6FVY.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains O

Description: 26S proteasome regulatory subunit RPN9 protein | Length: 388

No structure alignment results are available for 6FVY.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #28 | Chains H

Description: 26S proteasome regulatory subunit 7 homolog protein | Length: 426

No structure alignment results are available for 6FVY.H explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains I

Description: 26S proteasome regulatory subunit 4 homolog protein | Length: 385

No structure alignment results are available for 6FVY.I explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains C,c

Description: Proteasome subunit alpha type-3 protein | Length: 241

No structure alignment results are available for 6FVY.C, 6FVY.c explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #30 | Chains K

Description: 26S proteasome regulatory subunit 6B homolog protein | Length: 394

No structure alignment results are available for 6FVY.K explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #31 | Chains L

Description: 26S proteasome subunit RPT4 protein | Length: 388

No structure alignment results are available for 6FVY.L explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #32 | Chains M

Description: 26S proteasome regulatory subunit 6A protein | Length: 421

No structure alignment results are available for 6FVY.M explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains J

Description: 26S proteasome regulatory subunit 8 homolog protein | Length: 405

No structure alignment results are available for 6FVY.J explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains D,d

Description: Proteasome subunit alpha type-4 protein | Length: 252

No structure alignment results are available for 6FVY.D, 6FVY.d explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains E,e

Description: Proteasome subunit alpha type-5 protein | Length: 245

No structure alignment results are available for 6FVY.E, 6FVY.e explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains F,f

Description: Proteasome subunit alpha type-6 protein | Length: 232

No structure alignment results are available for 6FVY.F, 6FVY.f explicitly.

These chains are represented by chain 4R17.E which is 100% sequence identical.

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Entity #7 | Chains G,g

Description: Probable proteasome subunit alpha type-7 protein | Length: 245

No structure alignment results are available for 6FVY.G, 6FVY.g explicitly.

These chains are represented by chain 5LE5.F which has more than 50% sequence identity.

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Entity #8 | Chains 1,h

Description: Proteasome subunit beta type-1 protein | Length: 196

No structure alignment results are available for 6FVY.1, 6FVY.h explicitly.

These chains are represented by chain 4R17.N which is 100% sequence identical.

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Entity #9 | Chains 2,i

Description: Proteasome subunit beta type-2 protein | Length: 226

No structure alignment results are available for 6FVY.2, 6FVY.i explicitly.

These chains are represented by chain 5LE5.H which has more than 50% sequence identity.

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References