Structural Similarities for the Entities in PDB 6D6Q

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A

Description: Exosome complex component RRP45 protein | Length: 473

No structure alignment results are available for 6D6Q.A explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #10 | Chains J

Description: Exosome component 10 protein | Length: 761

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Entity #11 | Chains K

Description: Exosome complex exonuclease RRP44 protein | Length: 960

No structure alignment results are available for 6D6Q.K explicitly.

It is represented by chain 4IFD.J which has more than 40% sequence identity.

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Entity #12 | Chains L

Description: M-phase phosphoprotein 6 protein | Length: 162

No structure alignment results are available for 6D6Q.L explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #13 | Chains M

Description: Exosome RNA helicase MTR4 protein | Length: 1045

No structure alignment results are available for 6D6Q.M explicitly.

It is represented by chain 4U4C.A which has more than 50% sequence identity.

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Entity #14 | Chains N

Description: RNA (5'-R(*AP*GP*CP*AP*CP*CP*GP*UP*AP*AP*AP*GP*AP*CP*GP*C)-3') rna | Length: 16

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #15 | Chains O

Description: DNA/RNA (62-MER) hybrid | Length: 62

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains B

Description: Exosome complex component RRP41 protein | Length: 249

No structure alignment results are available for 6D6Q.B explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains C

Description: Exosome complex component RRP43 protein | Length: 278

No structure alignment results are available for 6D6Q.C explicitly.

It is represented by chain 2NN6.c which is 100% sequence identical.

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Entity #4 | Chains D

Description: Exosome complex component RRP46 protein | Length: 237

No structure alignment results are available for 6D6Q.D explicitly.

It is represented by chain 2NN6.d which is 100% sequence identical.

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Entity #5 | Chains E

Description: Exosome complex component RRP42 protein | Length: 293

No structure alignment results are available for 6D6Q.E explicitly.

It is represented by chain 2NN6.e which is 100% sequence identical.

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Entity #6 | Chains F

Description: Exosome complex component MTR3 protein | Length: 272

No structure alignment results are available for 6D6Q.F explicitly.

It is represented by chain 2NN6.f which is 100% sequence identical.

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Entity #7 | Chains G

Description: Exosome complex component RRP40 protein | Length: 277

No structure alignment results are available for 6D6Q.G explicitly.

It is represented by chain 2NN6.g which has more than 95% sequence identity.

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Entity #8 | Chains H

Description: Exosome complex component RRP4 protein | Length: 296

No structure alignment results are available for 6D6Q.H explicitly.

It is represented by chain 2NN6.h which is 100% sequence identical.

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Entity #9 | Chains I

Description: Exosome complex component CSL4 protein | Length: 197

No structure alignment results are available for 6D6Q.I explicitly.

It is represented by chain 2NN6.i which is 100% sequence identical.

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References