6CIL

PRE-REACTION COMPLEX, RAG1(E962Q)/2-INTACT/INTACT 12/23RSS COMPLEX IN MN2+


Structural Similarities for the Entities in PDB 6CIL

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,C

Description: V(D)J recombination-activating protein 1 protein | Length: 625

No structure alignment results are available for 6CIL.A, 6CIL.C explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #2 | Chains B,D

Description: V(D)J recombination-activating protein 2 protein | Length: 359

No structure alignment results are available for 6CIL.B, 6CIL.D explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #3 | Chains N

Description: High mobility group protein B1 protein | Length: 163

No structure alignment results are available for 6CIL.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains F

Description: Intact 12RSS substrate reverse strand dna | Length: 40

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains I

Description: Intact 12RSS substrate forward strand dna | Length: 40

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains G

Description: Intact 23RSS substrate reverse strand dna | Length: 55

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #7 | Chains J

Description: Intact 23RSS substrate forward strand dna | Length: 55

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References