Structural Similarities for the Entities in PDB 6CB1

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 1

Description: 35S pre-ribosomal RNA miscRNA rna | Length: 3396

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains I

Description: Ribosome production factor 1 protein | Length: 295

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Entity #11 | Chains K

Description: Proteasome-interacting protein CIC1 protein | Length: 376

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Entity #12 | Chains L

Description: 60S ribosomal protein L13-A protein | Length: 199

No structure alignment results are available for 6CB1.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains M

Description: 60S ribosomal protein L14-A protein | Length: 138

No structure alignment results are available for 6CB1.M explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains N

Description: 60S ribosomal protein L15-A protein | Length: 204

No structure alignment results are available for 6CB1.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains O

Description: 60S ribosomal protein L16-A protein | Length: 199

No structure alignment results are available for 6CB1.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains P

Description: 60S ribosomal protein L17-A protein | Length: 184

No structure alignment results are available for 6CB1.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains Q

Description: 60S ribosomal protein L18-A protein | Length: 186

No structure alignment results are available for 6CB1.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains S

Description: 60S ribosomal protein L20-A protein | Length: 172

No structure alignment results are available for 6CB1.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains X

Description: 60S ribosomal protein L25 protein | Length: 142

No structure alignment results are available for 6CB1.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains 2

Description: 5.8S rRNA rna | Length: 158

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains Y

Description: 60S ribosomal protein L26-A protein | Length: 127

No structure alignment results are available for 6CB1.Y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains Z

Description: 60S ribosomal protein L27-A protein | Length: 136

No structure alignment results are available for 6CB1.Z explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains 7

Description: Nucleolar protein 16 protein | Length: 231

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Entity #23 | Chains b

Description: Ribosome biogenesis protein BRX1 protein | Length: 291

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Entity #24 | Chains c

Description: 60S ribosomal protein L30 protein | Length: 105

No structure alignment results are available for 6CB1.c explicitly.

It is represented by chain 3VI6.A which has more than 50% sequence identity.

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Entity #25 | Chains d

Description: Ribosome biogenesis protein YTM1 protein | Length: 465

Entity #26 | Chains e

Description: 60S ribosomal protein L32 protein | Length: 130

No structure alignment results are available for 6CB1.e explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains f

Description: 60S ribosomal protein L33-A protein | Length: 107

No structure alignment results are available for 6CB1.f explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #28 | Chains g

Description: 60S ribosomal protein L34-A protein | Length: 121

No structure alignment results are available for 6CB1.g explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains h

Description: 60S ribosomal protein L35-A protein | Length: 120

No structure alignment results are available for 6CB1.h explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains 6

Description: ITS2 rna | Length: 232

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains i

Description: 60S ribosomal protein L36-A protein | Length: 100

No structure alignment results are available for 6CB1.i explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #31 | Chains j

Description: 60S ribosomal protein L37-A protein | Length: 88

No structure alignment results are available for 6CB1.j explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains k

Description: 60S ribosomal protein L38 protein | Length: 78

No structure alignment results are available for 6CB1.k explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains m

Description: rRNA-processing protein EBP2 protein | Length: 102

Entity #34 | Chains n

Description: Pescadillo homolog protein | Length: 605

No structure alignment results are available for 6CB1.n explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #35 | Chains o

Description: Ribosome biogenesis protein 15 protein | Length: 220

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Entity #36 | Chains p

Description: ATP-dependent RNA helicase HAS1 protein | Length: 505

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Entity #37 | Chains s

Description: Ribosome biogenesis protein ERB1 protein | Length: 569

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Entity #38 | Chains t

Description: Ribosome biogenesis protein RLP7 protein | Length: 322

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Entity #39 | Chains x

Description: BRX1 associated peptide protein | Length: 28

Entity #4 | Chains A

Description: Ribosome biogenesis protein NSA1 protein | Length: 463

No structure alignment results are available for 6CB1.A explicitly.

It is represented by chain 5SUI.A which is 100% sequence identical.

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Entity #40 | Chains z

Description: Ribosomal RNA-processing protein 1 protein | Length: 278

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Entity #5 | Chains C

Description: 60S ribosomal protein L4-A protein | Length: 362

No structure alignment results are available for 6CB1.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains D

Description: Protein MAK16 protein | Length: 306

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Entity #7 | Chains E

Description: 60S ribosomal protein L6-A protein | Length: 176

No structure alignment results are available for 6CB1.E explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains F

Description: 60S ribosomal protein L7-A protein | Length: 244

No structure alignment results are available for 6CB1.F explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains G

Description: 60S ribosomal protein L8-A protein | Length: 256

No structure alignment results are available for 6CB1.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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References