Structural Similarities for the Entities in PDB 6BYU

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A,B,G,H

Description: DNA-directed RNA polymerase subunit alpha protein | Length: 329

No structure alignment results are available for 6BYU.A, 6BYU.B, 6BYU.G, 6BYU.H explicitly.

These chains are represented by chain 2A6H.a which has more than 40% sequence identity.

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Entity #2 | Chains C,I

Description: DNA-directed RNA polymerase subunit beta protein | Length: 1342

No structure alignment results are available for 6BYU.C, 6BYU.I explicitly.

These chains are represented by chain 4YG2.C which has more than 95% sequence identity.

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Entity #3 | Chains D,J

Description: DNA-directed RNA polymerase subunit beta' protein | Length: 1407

No structure alignment results are available for 6BYU.D, 6BYU.J explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #4 | Chains E,K

Description: DNA-directed RNA polymerase subunit omega protein | Length: 91

No structure alignment results are available for 6BYU.E, 6BYU.K explicitly.

These chains are represented by chain 4YG2.E which is 100% sequence identical.

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Entity #5 | Chains F,L

Description: RNA polymerase sigma factor RpoD protein | Length: 613

No structure alignment results are available for 6BYU.F, 6BYU.L explicitly.

These chains are represented by chain 4YG2.F which is 100% sequence identical.

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References