Structural Similarities for the Entities in PDB 5Z3V

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains O

Description: Transcription regulatory protein SNF2 protein | Length: 735

No structure alignment results are available for 5Z3V.O explicitly.

It is represented by chain 5HZR.A which has more than 50% sequence identity.

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Entity #2 | Chains A,E

Description: Histone H3.2 protein | Length: 135

No structure alignment results are available for 5Z3V.A, 5Z3V.E explicitly.

These chains are represented by chain 1TZY.c which has more than 95% sequence identity.

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Entity #3 | Chains B,F

Description: Histone H4 protein | Length: 102

No structure alignment results are available for 5Z3V.B, 5Z3V.F explicitly.

These chains are represented by chain 1TZY.d which is 100% sequence identical.

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Entity #4 | Chains C,G

Description: Histone H2A protein | Length: 129

No structure alignment results are available for 5Z3V.C, 5Z3V.G explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #5 | Chains D,H

Description: Histone H2B 1.1 protein | Length: 122

No structure alignment results are available for 5Z3V.D, 5Z3V.H explicitly.

These chains are represented by chain 1TZY.b which has more than 90% sequence identity.

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Entity #6 | Chains I

Description: DNA (167-MER) dna | Length: 167

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #7 | Chains J

Description: DNA (167-MER) dna | Length: 167

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References