Structural Similarities for the Entities in PDB 5X2U

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C,E,G,I,K

Description: Hemoglobin subunit alpha protein | Length: 141

No structure alignment results are available for 5X2U.A, 5X2U.C, 5X2U.E, 5X2U.G, 5X2U.I, 5X2U.K explicitly.

These chains are represented by chain 2W72.A which has more than 95% sequence identity.

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Entity #2 | Chains B,D,F,H,J,L

Description: Hemoglobin subunit beta protein | Length: 146

No structure alignment results are available for 5X2U.B, 5X2U.D, 5X2U.F, 5X2U.H, 5X2U.J, 5X2U.L explicitly.

These chains are represented by chain 2W72.A which has more than 50% sequence identity.

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References