Structural Similarities for the Entities in PDB 5W1V

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,F,K,P

Description: HLA class I histocompatibility antigen, alpha chain E protein | Length: 278

No structure alignment results are available for 5W1V.A, 5W1V.F, 5W1V.K, 5W1V.P explicitly.

These chains are represented by chain 1K5N.a which has more than 70% sequence identity.

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Entity #2 | Chains B,G,L,Q

Description: Beta-2-microglobulin protein | Length: 100

No structure alignment results are available for 5W1V.B, 5W1V.G, 5W1V.L, 5W1V.Q explicitly.

These chains are represented by chain 1K5N.b which is 100% sequence identical.

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Entity #3 | Chains C,H,M,R

Description: VMAPRTLIL peptide from CMV gpUL40 protein | Length: 9

This entity is too short to be considered for the all vs. all structure alignments.


Entity #4 | Chains D,I,N,S

Description: GF4 T cell receptor alpha chain protein | Length: 207

No structure alignment results are available for 5W1V.D, 5W1V.I, 5W1V.N, 5W1V.S explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains E,J,O,T

Description: GF4 T cell receptor beta chain protein | Length: 246

No structure alignment results are available for 5W1V.E, 5W1V.J, 5W1V.O, 5W1V.T explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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References