Structural Similarities for the Entities in PDB 5VHI

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A

Description: 26S proteasome regulatory subunit 7 protein | Length: 352

No structure alignment results are available for 5VHI.A explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #10 | Chains X

Description: 26S proteasome non-ATPase regulatory subunit 11 protein | Length: 385

No structure alignment results are available for 5VHI.X explicitly.

It is represented by chain 3TXN.A which has more than 70% sequence identity.

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Entity #11 | Chains Y

Description: 26S proteasome non-ATPase regulatory subunit 6 protein | Length: 378

No structure alignment results are available for 5VHI.Y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains Z

Description: 26S proteasome non-ATPase regulatory subunit 7 protein | Length: 286

No structure alignment results are available for 5VHI.Z explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #13 | Chains a

Description: 26S proteasome non-ATPase regulatory subunit 13 protein | Length: 374

No structure alignment results are available for 5VHI.a explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains b

Description: 26S proteasome non-ATPase regulatory subunit 4 protein | Length: 191

No structure alignment results are available for 5VHI.b explicitly.

It is represented by chain 2X5N.A which has more than 40% sequence identity.

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Entity #15 | Chains c

Description: 26S proteasome non-ATPase regulatory subunit 14 protein | Length: 287

No structure alignment results are available for 5VHI.c explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #16 | Chains d

Description: 26S proteasome non-ATPase regulatory subunit 8 protein | Length: 257

No structure alignment results are available for 5VHI.d explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains G

Description: 26S proteasome non-ATPase regulatory subunit 10 protein | Length: 226

No structure alignment results are available for 5VHI.G explicitly.

It is represented by chain 3AJI.A which has more than 90% sequence identity.

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Entity #18 | Chains e

Description: 26S proteasome complex subunit SEM1 protein | Length: 70

No structure alignment results are available for 5VHI.e explicitly.

It is represented by chain 3T5X.B which is 100% sequence identical.

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Entity #19 | Chains f

Description: 26S proteasome non-ATPase regulatory subunit 2 protein | Length: 848

No structure alignment results are available for 5VHI.f explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #2 | Chains B

Description: 26S proteasome regulatory subunit 4 protein | Length: 341

No structure alignment results are available for 5VHI.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains C

Description: 26S proteasome regulatory subunit 8 protein | Length: 385

No structure alignment results are available for 5VHI.C explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #4 | Chains D

Description: 26S proteasome regulatory subunit 6B protein | Length: 368

No structure alignment results are available for 5VHI.D explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains E

Description: 26S proteasome regulatory subunit 10B protein | Length: 379

No structure alignment results are available for 5VHI.E explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #6 | Chains F

Description: 26S proteasome regulatory subunit 6A protein | Length: 380

No structure alignment results are available for 5VHI.F explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #7 | Chains U

Description: 26S proteasome non-ATPase regulatory subunit 1 protein | Length: 935

No structure alignment results are available for 5VHI.U explicitly.

It is represented by chain 4ADY.A which has more than 40% sequence identity.

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Entity #8 | Chains V

Description: 26S proteasome non-ATPase regulatory subunit 3 protein | Length: 488

No structure alignment results are available for 5VHI.V explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains W

Description: 26S proteasome non-ATPase regulatory subunit 12 protein | Length: 456

No structure alignment results are available for 5VHI.W explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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References