5VFS

Nucleotide-Driven Triple-State Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome


Structural Similarities for the Entities in PDB 5VFS

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains G,g

Description: Proteasome subunit alpha type-6 protein | Length: 240

No structure alignment results are available for 5VFS.G, 5VFS.g explicitly.

These chains are represented by chain 5LE5.G which is 100% sequence identical.

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Entity #10 | Chains P,p

Description: Proteasome subunit beta type-3 protein | Length: 204

No structure alignment results are available for 5VFS.P, 5VFS.p explicitly.

These chains are represented by chain 5LE5.I which is 100% sequence identical.

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Entity #11 | Chains Q,q

Description: Proteasome subunit beta type-2 protein | Length: 199

No structure alignment results are available for 5VFS.Q, 5VFS.q explicitly.

These chains are represented by chain 5LE5.J which is 100% sequence identical.

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Entity #12 | Chains R,r

Description: Proteasome subunit beta type-5 protein | Length: 201

No structure alignment results are available for 5VFS.R, 5VFS.r explicitly.

These chains are represented by chain 5LE5.K which is 100% sequence identical.

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Entity #13 | Chains S,s

Description: Proteasome subunit beta type-1 protein | Length: 213

No structure alignment results are available for 5VFS.S, 5VFS.s explicitly.

These chains are represented by chain 5LE5.L which is 100% sequence identical.

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Entity #14 | Chains T,t

Description: Proteasome subunit beta type-4 protein | Length: 215

No structure alignment results are available for 5VFS.T, 5VFS.t explicitly.

These chains are represented by chain 5LE5.M which is 100% sequence identical.

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Entity #15 | Chains U

Description: 26S proteasome non-ATPase regulatory subunit 1 protein | Length: 911

No structure alignment results are available for 5VFS.U explicitly.

It is represented by chain 4ADY.A which has more than 40% sequence identity.

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Entity #16 | Chains V

Description: 26S proteasome non-ATPase regulatory subunit 3 protein | Length: 480

No structure alignment results are available for 5VFS.V explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains W

Description: 26S proteasome non-ATPase regulatory subunit 12 protein | Length: 456

No structure alignment results are available for 5VFS.W explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #18 | Chains X

Description: 26S proteasome non-ATPase regulatory subunit 11 protein | Length: 380

No structure alignment results are available for 5VFS.X explicitly.

It is represented by chain 3TXN.A which has more than 70% sequence identity.

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Entity #19 | Chains Y

Description: 26S proteasome non-ATPase regulatory subunit 6 protein | Length: 378

No structure alignment results are available for 5VFS.Y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains H,h

Description: Proteasome subunit alpha type-2 protein | Length: 232

No structure alignment results are available for 5VFS.H, 5VFS.h explicitly.

These chains are represented by chain 5LE5.A which is 100% sequence identical.

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Entity #20 | Chains Z

Description: 26S proteasome non-ATPase regulatory subunit 7 protein | Length: 286

No structure alignment results are available for 5VFS.Z explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #21 | Chains a

Description: 26S proteasome non-ATPase regulatory subunit 13 protein | Length: 373

No structure alignment results are available for 5VFS.a explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains b

Description: 26S proteasome non-ATPase regulatory subunit 4 protein | Length: 191

No structure alignment results are available for 5VFS.b explicitly.

It is represented by chain 2X5N.A which has more than 40% sequence identity.

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Entity #23 | Chains c

Description: 26S proteasome non-ATPase regulatory subunit 14 protein | Length: 309

No structure alignment results are available for 5VFS.c explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #24 | Chains d

Description: 26S proteasome non-ATPase regulatory subunit 8 protein | Length: 257

No structure alignment results are available for 5VFS.d explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains e

Description: Sem1 protein | Length: 70

No structure alignment results are available for 5VFS.e explicitly.

It is represented by chain 3T5X.B which is 100% sequence identical.

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Entity #26 | Chains B

Description: 26S proteasome regulatory subunit 4 protein | Length: 369

No structure alignment results are available for 5VFS.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #27 | Chains A

Description: 26S proteasome regulatory subunit 7 protein | Length: 433

No structure alignment results are available for 5VFS.A explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #28 | Chains E

Description: 26S proteasome regulatory subunit 10B protein | Length: 403

No structure alignment results are available for 5VFS.E explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #29 | Chains F

Description: 26S proteasome regulatory subunit 6A protein | Length: 439

No structure alignment results are available for 5VFS.F explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains I,i

Description: Proteasome subunit alpha type-4 protein | Length: 250

No structure alignment results are available for 5VFS.I, 5VFS.i explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains C

Description: 26S proteasome regulatory subunit 8 protein | Length: 389

No structure alignment results are available for 5VFS.C explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #31 | Chains D

Description: 26S proteasome regulatory subunit 6B protein | Length: 418

No structure alignment results are available for 5VFS.D explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #32 | Chains f

Description: 26S proteasome non-ATPase regulatory subunit 2 protein | Length: 848

No structure alignment results are available for 5VFS.f explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #4 | Chains J,j

Description: Proteasome subunit alpha type-7 protein | Length: 243

No structure alignment results are available for 5VFS.J, 5VFS.j explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains K,k

Description: Proteasome subunit alpha type-5 protein | Length: 234

No structure alignment results are available for 5VFS.K, 5VFS.k explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains L,l

Description: Proteasome subunit alpha type-1 protein | Length: 238

No structure alignment results are available for 5VFS.L, 5VFS.l explicitly.

These chains are represented by chain 5LE5.E which is 100% sequence identical.

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Entity #7 | Chains M,m

Description: Proteasome subunit alpha type-3 protein | Length: 245

No structure alignment results are available for 5VFS.M, 5VFS.m explicitly.

These chains are represented by chain 5LE5.F which is 100% sequence identical.

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Entity #8 | Chains N,n

Description: Proteasome subunit beta type-6 protein | Length: 191

No structure alignment results are available for 5VFS.N, 5VFS.n explicitly.

These chains are represented by chain 5LE5.N which is 100% sequence identical.

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Entity #9 | Chains O,o

Description: Proteasome subunit beta type-7 protein | Length: 220

No structure alignment results are available for 5VFS.O, 5VFS.o explicitly.

These chains are represented by chain 5LE5.H which is 100% sequence identical.

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References