Structural Similarities for the Entities in PDB 5OXV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains J

Description: DNA STRAND 1 (601-based sequence model) dna | Length: 312

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains D,H,N,R

Description: Histone H2B 1.1 protein | Length: 126

No structure alignment results are available for 5OXV.D, 5OXV.H, 5OXV.N, 5OXV.R explicitly.

These chains are represented by chain 1TZY.b which has more than 95% sequence identity.

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Entity #3 | Chains C,G,M,Q

Description: Histone H2A protein | Length: 130

No structure alignment results are available for 5OXV.C, 5OXV.G, 5OXV.M, 5OXV.Q explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #4 | Chains B,F,L,P

Description: Histone H4 protein | Length: 102

No structure alignment results are available for 5OXV.B, 5OXV.F, 5OXV.L, 5OXV.P explicitly.

These chains are represented by chain 1TZY.d which is 100% sequence identical.

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Entity #5 | Chains A,E,K,O

Description: Histone H3.2 protein | Length: 135

No structure alignment results are available for 5OXV.A, 5OXV.E, 5OXV.K, 5OXV.O explicitly.

These chains are represented by chain 1TZY.c which has more than 95% sequence identity.

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Entity #6 | Chains I

Description: DNA STRAND 2 (601-based sequence model) dna | Length: 313

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References