5NGM

2.9S structure of the 70S ribosome composing the S. aureus 100S complex


Structural Similarities for the Entities in PDB 5NGM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains Aa

Description: 16S ribosomal RNA rna | Length: 1555

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains Aj

Description: 30S ribosomal protein S10 protein | Length: 102

No structure alignment results are available for 5NGM.Aj explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains Ak

Description: 30S ribosomal protein S11 protein | Length: 129

No structure alignment results are available for 5NGM.Ak explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains Al

Description: 30S ribosomal protein S12 protein | Length: 137

No structure alignment results are available for 5NGM.Al explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #13 | Chains Am

Description: 30S ribosomal protein S13 protein | Length: 121

No structure alignment results are available for 5NGM.Am explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains An

Description: 30S ribosomal protein S14 type Z protein | Length: 61

No structure alignment results are available for 5NGM.An explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #15 | Chains Ao

Description: 30S ribosomal protein S15 protein | Length: 89

No structure alignment results are available for 5NGM.Ao explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #16 | Chains Ap

Description: 30S ribosomal protein S16 protein | Length: 91

No structure alignment results are available for 5NGM.Ap explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains Aq

Description: 30S ribosomal protein S17 protein | Length: 87

No structure alignment results are available for 5NGM.Aq explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #18 | Chains Ar

Description: 30S ribosomal protein S18 protein | Length: 80

No structure alignment results are available for 5NGM.Ar explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #19 | Chains As

Description: 30S ribosomal protein S19 protein | Length: 92

No structure alignment results are available for 5NGM.As explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains Ab

Description: 30S ribosomal protein S2 protein | Length: 255

No structure alignment results are available for 5NGM.Ab explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #20 | Chains At

Description: 30S ribosomal protein S20 protein | Length: 83

No structure alignment results are available for 5NGM.At explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains Au

Description: 30S ribosomal protein S21 protein | Length: 58

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Entity #22 | Chains Av

Description: Ribosome hibernation promoting factor protein | Length: 190

No structure alignment results are available for 5NGM.Av explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains AA

Description: 23S Ribosomal RNA rna | Length: 2923

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #24 | Chains AB

Description: 5S Ribosomal RNA rna | Length: 115

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #25 | Chains AC

Description: 50S ribosomal protein L2 protein | Length: 277

No structure alignment results are available for 5NGM.AC explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #26 | Chains AD

Description: 50S ribosomal protein L3 protein | Length: 220

No structure alignment results are available for 5NGM.AD explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #27 | Chains AE

Description: 50S ribosomal protein L4 protein | Length: 207

No structure alignment results are available for 5NGM.AE explicitly.

It is represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #28 | Chains AF

Description: 50S ribosomal protein L5 protein | Length: 179

No structure alignment results are available for 5NGM.AF explicitly.

It is represented by chain 1IQ4.a which has more than 70% sequence identity.

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Entity #29 | Chains AG

Description: 50S ribosomal protein L6 protein | Length: 178

No structure alignment results are available for 5NGM.AG explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #3 | Chains Ac

Description: 30S ribosomal protein S3 protein | Length: 217

No structure alignment results are available for 5NGM.Ac explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #30 | Chains AH

Description: 50S ribosomal protein L13 protein | Length: 145

No structure alignment results are available for 5NGM.AH explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains AI

Description: 50S ribosomal protein L14 protein | Length: 122

No structure alignment results are available for 5NGM.AI explicitly.

It is represented by chain 1WHI.a which has more than 70% sequence identity.

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Entity #32 | Chains AJ

Description: 50S ribosomal protein L15 protein | Length: 146

No structure alignment results are available for 5NGM.AJ explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #33 | Chains AK

Description: 50S ribosomal protein L16 protein | Length: 144

No structure alignment results are available for 5NGM.AK explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #34 | Chains AL

Description: 50S ribosomal protein L17 protein | Length: 122

No structure alignment results are available for 5NGM.AL explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #35 | Chains AM

Description: 50S ribosomal protein L18 protein | Length: 119

No structure alignment results are available for 5NGM.AM explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #36 | Chains AN

Description: 50S ribosomal protein L19 protein | Length: 116

No structure alignment results are available for 5NGM.AN explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #37 | Chains AO

Description: 50S ribosomal protein L20 protein | Length: 118

No structure alignment results are available for 5NGM.AO explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #38 | Chains AP

Description: 50S ribosomal protein L21 protein | Length: 102

No structure alignment results are available for 5NGM.AP explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #39 | Chains AQ

Description: 50S ribosomal protein L22 protein | Length: 117

No structure alignment results are available for 5NGM.AQ explicitly.

It is represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #4 | Chains Ad

Description: 30S ribosomal protein S4 protein | Length: 200

No structure alignment results are available for 5NGM.Ad explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #40 | Chains AR

Description: 50S ribosomal protein L23 protein | Length: 91

No structure alignment results are available for 5NGM.AR explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #41 | Chains AS

Description: 50S ribosomal protein L24 protein | Length: 105

No structure alignment results are available for 5NGM.AS explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #42 | Chains AT

Description: 50S ribosomal protein L25 protein | Length: 217

No structure alignment results are available for 5NGM.AT explicitly.

It is represented by chain 4WF9.S which is 100% sequence identical.

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Entity #43 | Chains AU

Description: 50S ribosomal protein L27 protein | Length: 94

No structure alignment results are available for 5NGM.AU explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains AV

Description: 50S ribosomal protein L28 protein | Length: 62

No structure alignment results are available for 5NGM.AV explicitly.

It is represented by chain 5HL7.U which is 100% sequence identical.

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Entity #45 | Chains AW

Description: 50S ribosomal protein L29 protein | Length: 73

No structure alignment results are available for 5NGM.AW explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #46 | Chains AX

Description: 50S ribosomal protein L30 protein | Length: 59

No structure alignment results are available for 5NGM.AX explicitly.

It is represented by chain 1BXY.a which has more than 40% sequence identity.

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Entity #47 | Chains AY

Description: 50S ribosomal protein L31 type B protein | Length: 84

No structure alignment results are available for 5NGM.AY explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #48 | Chains AZ

Description: 50S ribosomal protein L32 protein | Length: 57

No structure alignment results are available for 5NGM.AZ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #49 | Chains A1

Description: 50S ribosomal protein L33 protein | Length: 49

No structure alignment results are available for 5NGM.A1 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #5 | Chains Ae

Description: 30S ribosomal protein S5 protein | Length: 166

No structure alignment results are available for 5NGM.Ae explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #50 | Chains A2

Description: 50S ribosomal protein L34 protein | Length: 45

No structure alignment results are available for 5NGM.A2 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #51 | Chains A3

Description: 50S ribosomal protein L35 protein | Length: 66

No structure alignment results are available for 5NGM.A3 explicitly.

It is represented by chain XXXX.null which has more than 30% sequence identity.

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Entity #52 | Chains A4

Description: 50S ribosomal protein L36 protein | Length: 37

No structure alignment results are available for 5NGM.A4 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains Af

Description: 30S ribosomal protein S6 protein | Length: 98

No structure alignment results are available for 5NGM.Af explicitly.

It is represented by chain 3R3T.A which has more than 50% sequence identity.

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Entity #7 | Chains Ag

Description: 30S ribosomal protein S7 protein | Length: 156

No structure alignment results are available for 5NGM.Ag explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains Ah

Description: 30S ribosomal protein S8 protein | Length: 132

No structure alignment results are available for 5NGM.Ah explicitly.

It is represented by chain 1SEI.a which has more than 70% sequence identity.

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Entity #9 | Chains Ai

Description: 30S ribosomal protein S9 protein | Length: 132

No structure alignment results are available for 5NGM.Ai explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References