Structural Similarities for the Entities in PDB 5N5Z

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A

Description: DNA-directed RNA polymerase I subunit RPA190 protein | Length: 1664

No structure alignment results are available for 5N5Z.A explicitly.

It is represented by chain 4C2M.A which is 100% sequence identical.

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Entity #10 | Chains J

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein | Length: 70

No structure alignment results are available for 5N5Z.J explicitly.

It is represented by chain 4C2M.J which is 100% sequence identical.

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Entity #11 | Chains K

Description: DNA-directed RNA polymerases I and III subunit RPAC2 protein | Length: 142

No structure alignment results are available for 5N5Z.K explicitly.

It is represented by chain 4C2M.K which is 100% sequence identical.

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Entity #12 | Chains L

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein | Length: 70

No structure alignment results are available for 5N5Z.L explicitly.

It is represented by chain 4C2M.1 which is 100% sequence identical.

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Entity #13 | Chains M

Description: DNA-directed RNA polymerase I subunit RPA49 protein | Length: 415

No structure alignment results are available for 5N5Z.M explicitly.

It is represented by chain 4C2M.2 which is 100% sequence identical.

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Entity #14 | Chains N

Description: DNA-directed RNA polymerase I subunit RPA34 protein | Length: 233

No structure alignment results are available for 5N5Z.N explicitly.

It is represented by chain 4C2M.3 which is 100% sequence identical.

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Entity #15 | Chains O

Description: RNA polymerase I-specific transcription initiation factor RRN3 protein | Length: 627

No structure alignment results are available for 5N5Z.O explicitly.

It is represented by chain 3TJ1.A which is 100% sequence identical.

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Entity #16 | Chains P

Description: RNA polymerase I-specific transcription initiation factor RRN6 protein | Length: 894

No structure alignment results are available for 5N5Z.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains Q

Description: RNA polymerase I-specific transcription initiation factor RRN7 protein | Length: 514

No structure alignment results are available for 5N5Z.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains R

Description: RNA polymerase I-specific transcription initiation factor RRN11 protein | Length: 507

No structure alignment results are available for 5N5Z.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains B

Description: DNA-directed RNA polymerase I subunit RPA135 protein | Length: 1203

No structure alignment results are available for 5N5Z.B explicitly.

It is represented by chain 4C2M.B which is 100% sequence identical.

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Entity #3 | Chains C

Description: DNA-directed RNA polymerases I and III subunit RPAC1 protein | Length: 335

No structure alignment results are available for 5N5Z.C explicitly.

It is represented by chain 4C2M.C which is 100% sequence identical.

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Entity #4 | Chains D

Description: DNA-directed RNA polymerase I subunit RPA14 protein | Length: 137

No structure alignment results are available for 5N5Z.D explicitly.

It is represented by chain 4C2M.D which is 100% sequence identical.

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Entity #5 | Chains E

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein | Length: 215

No structure alignment results are available for 5N5Z.E explicitly.

It is represented by chain 1DZF.a which is 100% sequence identical.

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Entity #6 | Chains F

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein | Length: 155

No structure alignment results are available for 5N5Z.F explicitly.

It is represented by chain 4C2M.F which is 100% sequence identical.

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Entity #7 | Chains G

Description: DNA-directed RNA polymerase I subunit RPA43 protein | Length: 326

No structure alignment results are available for 5N5Z.G explicitly.

It is represented by chain 4C2M.4 which is 100% sequence identical.

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Entity #8 | Chains H

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein | Length: 146

No structure alignment results are available for 5N5Z.H explicitly.

It is represented by chain 4C2M.H which is 100% sequence identical.

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Entity #9 | Chains I

Description: DNA-directed RNA polymerase I subunit RPA12 protein | Length: 125

No structure alignment results are available for 5N5Z.I explicitly.

It is represented by chain 4C2M.I which is 100% sequence identical.

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References