Structural Similarities for the Entities in PDB 5MYJ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains AA

Description: 16S ribosomal RNA rna | Length: 1535

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains AJ

Description: 30S ribosomal protein S10 protein | Length: 102

No structure alignment results are available for 5MYJ.AJ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains AK

Description: 30S ribosomal protein S11 protein | Length: 127

No structure alignment results are available for 5MYJ.AK explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains AL

Description: 30S ribosomal protein S12 protein | Length: 137

No structure alignment results are available for 5MYJ.AL explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #13 | Chains AM

Description: 30S ribosomal protein S13 protein | Length: 121

No structure alignment results are available for 5MYJ.AM explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains AN

Description: 30S ribosomal protein S14 type Z protein | Length: 61

No structure alignment results are available for 5MYJ.AN explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #15 | Chains AO

Description: 30S ribosomal protein S15 protein | Length: 89

No structure alignment results are available for 5MYJ.AO explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #16 | Chains AP

Description: 30S ribosomal protein S16 protein | Length: 90

No structure alignment results are available for 5MYJ.AP explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #17 | Chains AQ

Description: 30S ribosomal protein S17 protein | Length: 86

No structure alignment results are available for 5MYJ.AQ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #18 | Chains AR

Description: 30S ribosomal protein S18 protein | Length: 81

No structure alignment results are available for 5MYJ.AR explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #19 | Chains AS

Description: 30S ribosomal protein S19 protein | Length: 92

No structure alignment results are available for 5MYJ.AS explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains AB

Description: 30S ribosomal protein S2 protein | Length: 255

No structure alignment results are available for 5MYJ.AB explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #20 | Chains AT

Description: 30S ribosomal protein S20 protein | Length: 77

No structure alignment results are available for 5MYJ.AT explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #21 | Chains AU

Description: 30S ribosomal protein S21 protein | Length: 58

No structure alignment results are available for 5MYJ.AU explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #22 | Chains B0

Description: 50S ribosomal protein L28 protein | Length: 64

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Entity #23 | Chains B1

Description: 50S ribosomal protein L29 protein | Length: 69

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Entity #24 | Chains B2

Description: 50S ribosomal protein L30 protein | Length: 59

No structure alignment results are available for 5MYJ.B2 explicitly.

It is represented by chain 1BXY.a which has more than 40% sequence identity.

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Entity #25 | Chains B3

Description: 50S ribosomal protein L31 type B protein | Length: 81

No structure alignment results are available for 5MYJ.B3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #26 | Chains B4

Description: 50S ribosomal protein L32 protein | Length: 57

No structure alignment results are available for 5MYJ.B4 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #27 | Chains B5

Description: 50S ribosomal protein L33 3 protein | Length: 49

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Entity #28 | Chains B6

Description: 50S ribosomal protein L34 protein | Length: 44

No structure alignment results are available for 5MYJ.B6 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #29 | Chains B7

Description: 50S ribosomal protein L35 protein | Length: 66

No structure alignment results are available for 5MYJ.B7 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #3 | Chains AC

Description: 30S ribosomal protein S3 protein | Length: 217

No structure alignment results are available for 5MYJ.AC explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #30 | Chains B8

Description: 50S ribosomal protein L36 protein | Length: 38

No structure alignment results are available for 5MYJ.B8 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains BA

Description: 23S ribosomal RNA rna | Length: 2897

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #32 | Chains BB

Description: 5S ribosomal RNA rna | Length: 115

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #33 | Chains BD

Description: 50S ribosomal protein L2 protein | Length: 276

No structure alignment results are available for 5MYJ.BD explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #34 | Chains BE

Description: 50S ribosomal protein L3 protein | Length: 207

No structure alignment results are available for 5MYJ.BE explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #35 | Chains BF

Description: 50S ribosomal protein L4 protein | Length: 208

No structure alignment results are available for 5MYJ.BF explicitly.

It is represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #36 | Chains BG

Description: 50S ribosomal protein L5 protein | Length: 180

No structure alignment results are available for 5MYJ.BG explicitly.

It is represented by chain 1IQ4.a which has more than 70% sequence identity.

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Entity #37 | Chains BH

Description: 50S ribosomal protein L6 protein | Length: 178

No structure alignment results are available for 5MYJ.BH explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #38 | Chains BM

Description: 50S ribosomal protein L13 protein | Length: 148

No structure alignment results are available for 5MYJ.BM explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #39 | Chains BN

Description: 50S ribosomal protein L14 protein | Length: 122

No structure alignment results are available for 5MYJ.BN explicitly.

It is represented by chain 1WHI.a which has more than 70% sequence identity.

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Entity #4 | Chains AD

Description: 30S ribosomal protein S4 protein | Length: 203

No structure alignment results are available for 5MYJ.AD explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #40 | Chains BO

Description: 50S ribosomal protein L15 protein | Length: 147

No structure alignment results are available for 5MYJ.BO explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #41 | Chains BP

Description: 50S ribosomal protein L16 protein | Length: 137

No structure alignment results are available for 5MYJ.BP explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #42 | Chains BQ

Description: 50S ribosomal protein L17 protein | Length: 126

No structure alignment results are available for 5MYJ.BQ explicitly.

It is represented by chain XXXX.null which has more than 30% sequence identity.

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Entity #43 | Chains BR

Description: 50S ribosomal protein L18 protein | Length: 115

No structure alignment results are available for 5MYJ.BR explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains BS

Description: 50S ribosomal protein L19 protein | Length: 114

No structure alignment results are available for 5MYJ.BS explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #45 | Chains BT

Description: 50S ribosomal protein L20 protein | Length: 119

No structure alignment results are available for 5MYJ.BT explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #46 | Chains BU

Description: 50S ribosomal protein L21 protein | Length: 104

No structure alignment results are available for 5MYJ.BU explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #47 | Chains BV

Description: 50S ribosomal protein L22 protein | Length: 115

No structure alignment results are available for 5MYJ.BV explicitly.

It is represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #48 | Chains BW

Description: 50S ribosomal protein L23 protein | Length: 97

No structure alignment results are available for 5MYJ.BW explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #49 | Chains BX

Description: 50S ribosomal protein L24 protein | Length: 101

No structure alignment results are available for 5MYJ.BX explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains AE

Description: 30S ribosomal protein S5 protein | Length: 168

No structure alignment results are available for 5MYJ.AE explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #50 | Chains BZ

Description: 50S ribosomal protein L27 protein | Length: 94

No structure alignment results are available for 5MYJ.BZ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #51 | Chains A

Description: Ribosome hibernation promotion factor protein | Length: 185

No structure alignment results are available for 5MYJ.A explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains AF

Description: 30S ribosomal protein S6 protein | Length: 97

No structure alignment results are available for 5MYJ.AF explicitly.

It is represented by chain 3R3T.A which has more than 50% sequence identity.

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Entity #7 | Chains AG

Description: 30S ribosomal protein S7 protein | Length: 155

No structure alignment results are available for 5MYJ.AG explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains AH

Description: 30S ribosomal protein S8 protein | Length: 132

No structure alignment results are available for 5MYJ.AH explicitly.

It is represented by chain 1SEI.a which has more than 70% sequence identity.

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Entity #9 | Chains AI

Description: 30S ribosomal protein S9 protein | Length: 130

No structure alignment results are available for 5MYJ.AI explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References