Structural Similarities for the Entities in PDB 5MRF

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: 21S ribosomal RNA rna | Length: 3296

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains J

Description: uL15m protein | Length: 220

No structure alignment results are available for 5MRF.J explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains K

Description: uL16m protein | Length: 195

No structure alignment results are available for 5MRF.K explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains L

Description: bL17m protein | Length: 237

No structure alignment results are available for 5MRF.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains M

Description: bL19m protein | Length: 151

No structure alignment results are available for 5MRF.M explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains N

Description: bL21m protein | Length: 118

No structure alignment results are available for 5MRF.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains O

Description: uL22m protein | Length: 225

No structure alignment results are available for 5MRF.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains P

Description: uL23m protein | Length: 207

No structure alignment results are available for 5MRF.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains Q

Description: uL24m protein | Length: 296

No structure alignment results are available for 5MRF.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains R

Description: bL27m protein | Length: 337

No structure alignment results are available for 5MRF.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains S

Description: bL28m protein | Length: 216

No structure alignment results are available for 5MRF.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains B

Description: uL2m protein | Length: 393

No structure alignment results are available for 5MRF.B explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #20 | Chains T

Description: uL29m protein | Length: 225

No structure alignment results are available for 5MRF.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains U

Description: uL30m protein | Length: 82

No structure alignment results are available for 5MRF.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains V

Description: bL31m protein | Length: 177

No structure alignment results are available for 5MRF.V explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains W

Description: bL32m protein | Length: 112

No structure alignment results are available for 5MRF.W explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains X

Description: bL33m protein | Length: 64

No structure alignment results are available for 5MRF.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains Y

Description: bL34m protein | Length: 46

No structure alignment results are available for 5MRF.Y explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #26 | Chains Z

Description: bL35m protein | Length: 62

No structure alignment results are available for 5MRF.Z explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains 0

Description: bL36m protein | Length: 38

No structure alignment results are available for 5MRF.0 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #28 | Chains 1

Description: mL38 protein | Length: 348

No structure alignment results are available for 5MRF.1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains 2

Description: mL40 protein | Length: 113

No structure alignment results are available for 5MRF.2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains C

Description: uL3m protein | Length: 249

No structure alignment results are available for 5MRF.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains 3

Description: mL41 protein | Length: 130

No structure alignment results are available for 5MRF.3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #31 | Chains 4

Description: mL43 protein | Length: 138

No structure alignment results are available for 5MRF.4 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains 5

Description: mL44 protein | Length: 324

No structure alignment results are available for 5MRF.5 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains 6

Description: mL46 protein | Length: 281

No structure alignment results are available for 5MRF.6 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #34 | Chains 7

Description: mL49 protein | Length: 106

No structure alignment results are available for 5MRF.7 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #35 | Chains 8

Description: mL50 protein | Length: 264

No structure alignment results are available for 5MRF.8 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #36 | Chains 9

Description: mL57 protein | Length: 215

No structure alignment results are available for 5MRF.9 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains a

Description: mL58 protein | Length: 177

No structure alignment results are available for 5MRF.a explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #38 | Chains b

Description: mL59 protein | Length: 155

No structure alignment results are available for 5MRF.b explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #39 | Chains c

Description: mL60 protein | Length: 119

No structure alignment results are available for 5MRF.c explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains D

Description: uL4m protein | Length: 252

No structure alignment results are available for 5MRF.D explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #40 | Chains d

Description: mL67 protein | Length: 215

No structure alignment results are available for 5MRF.d explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #41 | Chains AA

Description: bS1m protein | Length: 344

No structure alignment results are available for 5MRF.AA explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #42 | Chains BB

Description: uS2m protein | Length: 266

No structure alignment results are available for 5MRF.BB explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains CC

Description: uS3m protein | Length: 398

No structure alignment results are available for 5MRF.CC explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #44 | Chains DD

Description: uS4m protein | Length: 486

No structure alignment results are available for 5MRF.DD explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #45 | Chains EE

Description: uS5m protein | Length: 293

No structure alignment results are available for 5MRF.EE explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #46 | Chains FF

Description: bS6m protein | Length: 125

No structure alignment results are available for 5MRF.FF explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #47 | Chains GG

Description: uS7m protein | Length: 161

No structure alignment results are available for 5MRF.GG explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #48 | Chains HH

Description: uS8m protein | Length: 154

No structure alignment results are available for 5MRF.HH explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #49 | Chains II

Description: uS9m protein | Length: 244

No structure alignment results are available for 5MRF.II explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains E

Description: uL5m protein | Length: 274

No structure alignment results are available for 5MRF.E explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #50 | Chains JJ

Description: uS10m protein | Length: 186

No structure alignment results are available for 5MRF.JJ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #51 | Chains KK

Description: uS11m protein | Length: 148

No structure alignment results are available for 5MRF.KK explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #52 | Chains LL

Description: uS12m protein | Length: 124

No structure alignment results are available for 5MRF.LL explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #53 | Chains MM

Description: uS13m protein | Length: 120

No structure alignment results are available for 5MRF.MM explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #54 | Chains NN

Description: uS14m protein | Length: 115

No structure alignment results are available for 5MRF.NN explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #55 | Chains OO

Description: uS15m protein | Length: 253

No structure alignment results are available for 5MRF.OO explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #56 | Chains PP

Description: bS16m protein | Length: 119

No structure alignment results are available for 5MRF.PP explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #57 | Chains QQ

Description: uS17m protein | Length: 237

No structure alignment results are available for 5MRF.QQ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #58 | Chains RR

Description: bS18m protein | Length: 99

No structure alignment results are available for 5MRF.RR explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #59 | Chains SS

Description: uS19m protein | Length: 80

No structure alignment results are available for 5MRF.SS explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains F

Description: uL6m protein | Length: 196

No structure alignment results are available for 5MRF.F explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #60 | Chains TT

Description: bS21m protein | Length: 92

No structure alignment results are available for 5MRF.TT explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #61 | Chains UU

Description: mS23 protein | Length: 233

No structure alignment results are available for 5MRF.UU explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #62 | Chains VV

Description: mS26 protein | Length: 233

No structure alignment results are available for 5MRF.VV explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #63 | Chains WW

Description: mS29 protein | Length: 401

No structure alignment results are available for 5MRF.WW explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #64 | Chains XX

Description: mS33 protein | Length: 96

No structure alignment results are available for 5MRF.XX explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #65 | Chains YY

Description: mS35 protein | Length: 273

No structure alignment results are available for 5MRF.YY explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #66 | Chains ZZ

Description: mS37 protein | Length: 91

No structure alignment results are available for 5MRF.ZZ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #67 | Chains 11

Description: mS38 protein | Length: 34

No structure alignment results are available for 5MRF.11 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #68 | Chains 22

Description: mS41 protein | Length: 99

No structure alignment results are available for 5MRF.22 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #69 | Chains 33

Description: mS42 protein | Length: 255

No structure alignment results are available for 5MRF.33 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains G

Description: bL9m protein | Length: 74

No structure alignment results are available for 5MRF.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #70 | Chains 44

Description: mS43 protein | Length: 321

No structure alignment results are available for 5MRF.44 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #71 | Chains 55

Description: mS44 protein | Length: 339

No structure alignment results are available for 5MRF.55 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #72 | Chains 66

Description: mS45 protein | Length: 319

No structure alignment results are available for 5MRF.66 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #73 | Chains 77

Description: mS46 protein | Length: 165

No structure alignment results are available for 5MRF.77 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #74 | Chains 88

Description: mS47 protein | Length: 457

No structure alignment results are available for 5MRF.88 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #75 | Chains aa

Description: 15S ribosomal RNA rna | Length: 1649

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #76 | Chains bb

Description: tRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #77 | Chains cc

Description: unknown protein sequence 1 protein | Length: 94

Entity #78 | Chains dd

Description: unknown protein sequence 2 protein | Length: 151

Entity #8 | Chains H

Description: uL13m protein | Length: 160

No structure alignment results are available for 5MRF.H explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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