Structural Similarities for the Entities in PDB 5MQF

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A

Description: Pre-mRNA-processing-splicing factor 8 protein | Length: 2335

No structure alignment results are available for 5MQF.A explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #10 | Chains M

Description: Pre-mRNA-splicing factor SYF1 protein | Length: 855

No structure alignment results are available for 5MQF.M explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains N

Description: Pre-mRNA-splicing factor SYF2 protein | Length: 243

No structure alignment results are available for 5MQF.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains O

Description: Crooked neck-like protein 1 protein | Length: 848

No structure alignment results are available for 5MQF.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains P

Description: Pre-mRNA-splicing factor RBM22 protein | Length: 420

No structure alignment results are available for 5MQF.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains Q

Description: Protein BUD31 homolog protein | Length: 144

No structure alignment results are available for 5MQF.Q explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #15 | Chains R

Description: Spliceosome-associated protein CWC15 homolog protein | Length: 229

No structure alignment results are available for 5MQF.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains S

Description: Serine/arginine repetitive matrix protein 2 protein | Length: 2752

No structure alignment results are available for 5MQF.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains T

Description: Pre-mRNA-splicing factor CWC22 homolog protein | Length: 908

No structure alignment results are available for 5MQF.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains U

Description: Intron-binding protein aquarius protein | Length: 1485

No structure alignment results are available for 5MQF.U explicitly.

It is represented by chain 4PJ3.A which is 100% sequence identical.

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Entity #19 | Chains V

Description: Peptidyl-prolyl cis-trans isomerase-like 1 protein | Length: 166

No structure alignment results are available for 5MQF.V explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains B

Description: 116 kDa U5 small nuclear ribonucleoprotein component protein | Length: 972

No structure alignment results are available for 5MQF.B explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #20 | Chains W

Description: U2 small nuclear ribonucleoprotein A' protein | Length: 255

No structure alignment results are available for 5MQF.W explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #21 | Chains X

Description: U2 small nuclear ribonucleoprotein B'' protein | Length: 225

No structure alignment results are available for 5MQF.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains a,h

Description: Small nuclear ribonucleoprotein Sm D2 protein | Length: 118

No structure alignment results are available for 5MQF.a, 5MQF.h explicitly.

These chains are represented by chain 4F7U.B which is 100% sequence identical.

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Entity #23 | Chains b,i

Description: Small nuclear ribonucleoprotein F protein | Length: 86

No structure alignment results are available for 5MQF.b, 5MQF.i explicitly.

These chains are represented by chain 4F7U.F which is 100% sequence identical.

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Entity #24 | Chains c,j

Description: Small nuclear ribonucleoprotein E protein | Length: 92

No structure alignment results are available for 5MQF.c, 5MQF.j explicitly.

These chains are represented by chain 4F7U.E which is 100% sequence identical.

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Entity #25 | Chains d,k

Description: Small nuclear ribonucleoprotein G protein | Length: 76

No structure alignment results are available for 5MQF.d, 5MQF.k explicitly.

These chains are represented by chain 4F7U.G which is 100% sequence identical.

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Entity #26 | Chains e,l

Description: Small nuclear ribonucleoprotein Sm D3 protein | Length: 126

No structure alignment results are available for 5MQF.e, 5MQF.l explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains f,m

Description: Small nuclear ribonucleoprotein-associated proteins B and B' protein | Length: 240

No structure alignment results are available for 5MQF.f, 5MQF.m explicitly.

These chains are represented by chain 3PGW.B which is 100% sequence identical.

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Entity #28 | Chains g,n

Description: Small nuclear ribonucleoprotein Sm D1 protein | Length: 119

No structure alignment results are available for 5MQF.g, 5MQF.n explicitly.

These chains are represented by chain 4F7U.A which is 100% sequence identical.

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Entity #29 | Chains o

Description: Peptidyl-prolyl cis-trans isomerase E protein | Length: 301

No structure alignment results are available for 5MQF.o explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains C

Description: SNW domain-containing protein 1 protein | Length: 536

No structure alignment results are available for 5MQF.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains p

Description: Eukaryotic initiation factor 4A-III protein | Length: 411

No structure alignment results are available for 5MQF.p explicitly.

It is represented by chain 3PEY.A which has more than 40% sequence identity.

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Entity #31 | Chains q

Description: ATP-dependent RNA helicase DHX8 protein | Length: 1218

No structure alignment results are available for 5MQF.q explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #32 | Chains Y,Z

Description: MINX pre-mRNA (intron) rna | Length: 324

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #33 | Chains 2

Description: Human gene for small nuclear RNA U2 (snRNA U2) rna | Length: 188

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #34 | Chains 5

Description: Homo sapiens U5 A small nuclear RNA rna | Length: 116

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #35 | Chains 6

Description: Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA rna | Length: 106

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains D

Description: Pleiotropic regulator 1 protein | Length: 515

No structure alignment results are available for 5MQF.D explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #5 | Chains E

Description: Pre-mRNA-processing factor 17 protein | Length: 579

No structure alignment results are available for 5MQF.E explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #6 | Chains F

Description: U5 small nuclear ribonucleoprotein 40 kDa protein protein | Length: 357

No structure alignment results are available for 5MQF.F explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains G,H,I,J

Description: Pre-mRNA-processing factor 19 protein | Length: 504

No structure alignment results are available for 5MQF.G, 5MQF.H, 5MQF.I, 5MQF.J explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains K

Description: Pre-mRNA-splicing factor SPF27 protein | Length: 225

No structure alignment results are available for 5MQF.K explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains L

Description: Cell division cycle 5-like protein protein | Length: 802

No structure alignment results are available for 5MQF.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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References