Structural Similarities for the Entities in PDB 5MMM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 0

Description: 50S ribosomal protein L31 protein | Length: 130

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Entity #10 | Chains B

Description: 5S ribosomal RNA rna | Length: 121

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #11 | Chains C

Description: 50S ribosomal protein L2, chloroplastic protein | Length: 272

No structure alignment results are available for 5MMM.C explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains D

Description: plastid ribosomal protein uL3c protein | Length: 305

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Entity #13 | Chains E

Description: plastid ribosomal protein uL4c protein | Length: 293

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Entity #14 | Chains F

Description: plastid ribosomal protein uL5c protein | Length: 258

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Entity #15 | Chains G

Description: plastid ribosomal protein uL6c protein | Length: 220

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Entity #16 | Chains H

Description: plastid ribosomal protein bL9c protein | Length: 196

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Entity #17 | Chains I

Description: plastid ribosomal protein uL10c protein | Length: 232

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Entity #18 | Chains J

Description: 50S ribosomal protein L11, chloroplastic protein | Length: 224

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Entity #19 | Chains K

Description: 50S ribosomal protein L13, chloroplastic protein | Length: 250

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Entity #2 | Chains 1

Description: 50S ribosomal protein L32, chloroplastic protein | Length: 57

No structure alignment results are available for 5MMM.1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #20 | Chains L

Description: 50S ribosomal protein L14, chloroplastic protein | Length: 121

No structure alignment results are available for 5MMM.L explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #21 | Chains M

Description: plastid ribosomal protein uL15c protein | Length: 271

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Entity #22 | Chains N

Description: 50S ribosomal protein L16, chloroplastic protein | Length: 135

No structure alignment results are available for 5MMM.N explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #23 | Chains O

Description: plastid ribosomal protein uL14c protein | Length: 126

No structure alignment results are available for 5MMM.O explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #24 | Chains P

Description: plastid ribosomal protein uL18c protein | Length: 166

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Entity #25 | Chains Q

Description: 50S ribosomal protein L19, chloroplastic protein | Length: 233

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Entity #26 | Chains R

Description: 50S ribosomal protein L20, chloroplastic protein | Length: 128

No structure alignment results are available for 5MMM.R explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #27 | Chains S

Description: 50S ribosomal protein L21, chloroplastic protein | Length: 256

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Entity #28 | Chains T

Description: 50S ribosomal protein L22, chloroplastic protein | Length: 199

No structure alignment results are available for 5MMM.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains U

Description: 50S ribosomal protein L23, chloroplastic protein | Length: 198

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Entity #3 | Chains 2

Description: 50S ribosomal protein L33, chloroplastic protein | Length: 66

No structure alignment results are available for 5MMM.2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains V

Description: plastid ribosomal protein uL24c protein | Length: 192

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Entity #31 | Chains W

Description: 4.5S ribosomal RNA rna | Length: 106

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #32 | Chains X

Description: plastid ribosomal protein bL27c protein | Length: 194

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Entity #33 | Chains Y

Description: plastid ribosomal protein bL28c protein | Length: 148

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Entity #34 | Chains Z

Description: plastid ribosomal protein uL29c protein | Length: 168

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Entity #35 | Chains z

Description: tRNA-Phe rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #36 | Chains 8

Description: plastid ribosomal protein bS1c protein | Length: 174

Entity #37 | Chains a

Description: 16S ribosomal RNA rna | Length: 1491

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #38 | Chains b

Description: 30S ribosomal protein S2, chloroplastic protein | Length: 236

No structure alignment results are available for 5MMM.b explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #39 | Chains c

Description: 30S ribosomal protein S3, chloroplastic protein | Length: 218

No structure alignment results are available for 5MMM.c explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains 3

Description: 50S ribosomal protein L34, chloroplastic protein | Length: 152

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Entity #40 | Chains d

Description: 30S ribosomal protein S4, chloroplastic protein | Length: 201

No structure alignment results are available for 5MMM.d explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #41 | Chains e

Description: 30S ribosomal protein S5, chloroplastic protein | Length: 308

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Entity #42 | Chains f

Description: plastid ribosomal protein bS6c protein | Length: 211

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Entity #43 | Chains g

Description: 30S ribosomal protein S7, chloroplastic protein | Length: 155

No structure alignment results are available for 5MMM.g explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #44 | Chains h

Description: 30S ribosomal protein S8, chloroplastic protein | Length: 134

No structure alignment results are available for 5MMM.h explicitly.

It is represented by chain 1SEI.a which has more than 40% sequence identity.

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Entity #45 | Chains i

Description: plastid ribosomal protein uS9c protein | Length: 208

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Entity #46 | Chains j

Description: plastid ribosomal protein uS10c protein | Length: 195

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Entity #47 | Chains k

Description: 30S ribosomal protein S11, chloroplastic protein | Length: 138

No structure alignment results are available for 5MMM.k explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #48 | Chains l

Description: 30S ribosomal protein S12, chloroplastic protein | Length: 123

No structure alignment results are available for 5MMM.l explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #49 | Chains m

Description: plastid ribosomal protein uS13c protein | Length: 172

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Entity #5 | Chains 4

Description: 50S ribosomal protein L35, chloroplastic protein | Length: 159

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Entity #50 | Chains n

Description: 30S ribosomal protein S14, chloroplastic protein | Length: 100

No structure alignment results are available for 5MMM.n explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #51 | Chains o

Description: 30S ribosomal protein S15, chloroplastic protein | Length: 90

No structure alignment results are available for 5MMM.o explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #52 | Chains p

Description: 30S ribosomal protein S16, chloroplastic protein | Length: 88

No structure alignment results are available for 5MMM.p explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #53 | Chains q

Description: plastid ribosomal protein uS17c protein | Length: 165

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Entity #54 | Chains r

Description: 30S ribosomal protein S18, chloroplastic protein | Length: 101

No structure alignment results are available for 5MMM.r explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #55 | Chains s

Description: 30S ribosomal protein S19 alpha, chloroplastic protein | Length: 92

No structure alignment results are available for 5MMM.s explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #56 | Chains t

Description: plastid ribosomal protein bS20c protein | Length: 183

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Entity #57 | Chains u

Description: plastid ribosomal protein bS21c protein | Length: 180

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Entity #58 | Chains v

Description: 30S ribosomal protein 2, chloroplastic protein | Length: 260

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Entity #59 | Chains w

Description: 30S ribosomal protein 3, chloroplastic protein | Length: 179

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Entity #6 | Chains 5

Description: 50S ribosomal protein L36, chloroplastic protein | Length: 37

No structure alignment results are available for 5MMM.5 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #60 | Chains x

Description: 30S ribosomal protein S31, chloroplastic protein | Length: 101

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Entity #61 | Chains y

Description: Ribosome-binding factor PSRP1, chloroplastic protein | Length: 302

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Entity #7 | Chains 6

Description: plastid ribosomal protein cL37, PSRP5 protein | Length: 142

No structure alignment results are available for 5MMM.6 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains 7

Description: 50S ribosomal protein 6, chloroplastic protein | Length: 116

No structure alignment results are available for 5MMM.7 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains A

Description: 23S ribosomal RNA rna | Length: 2810

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References