Structural Similarities for the Entities in PDB 5MMJ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 0

Description: 50S ribosomal protein L31 protein | Length: 130

No structure alignment results are available for 5MMJ.0 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #10 | Chains h

Description: 30S ribosomal protein S8, chloroplastic protein | Length: 134

No structure alignment results are available for 5MMJ.h explicitly.

It is represented by chain 1SEI.a which has more than 40% sequence identity.

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Entity #11 | Chains i

Description: plastid ribosomal protein uS9c protein | Length: 208

No structure alignment results are available for 5MMJ.i explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains j

Description: plastid ribosomal protein uS10c protein | Length: 195

No structure alignment results are available for 5MMJ.j explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains k

Description: 30S ribosomal protein S11, chloroplastic protein | Length: 138

No structure alignment results are available for 5MMJ.k explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains l

Description: 30S ribosomal protein S12, chloroplastic protein | Length: 123

No structure alignment results are available for 5MMJ.l explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #15 | Chains m

Description: plastid ribosomal protein uS13c protein | Length: 172

No structure alignment results are available for 5MMJ.m explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains n

Description: 30S ribosomal protein S14, chloroplastic protein | Length: 100

No structure alignment results are available for 5MMJ.n explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #17 | Chains o

Description: 30S ribosomal protein S15, chloroplastic protein | Length: 90

No structure alignment results are available for 5MMJ.o explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains p

Description: 30S ribosomal protein S16, chloroplastic protein | Length: 88

No structure alignment results are available for 5MMJ.p explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains q

Description: plastid ribosomal protein uS17c protein | Length: 165

No structure alignment results are available for 5MMJ.q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains 8

Description: plastid ribosomal protein bS1c protein | Length: 174

Entity #20 | Chains r

Description: 30S ribosomal protein S18, chloroplastic protein | Length: 101

No structure alignment results are available for 5MMJ.r explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains s

Description: 30S ribosomal protein S19 alpha, chloroplastic protein | Length: 92

No structure alignment results are available for 5MMJ.s explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #22 | Chains t

Description: plastid ribosomal protein bS20c protein | Length: 183

No structure alignment results are available for 5MMJ.t explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains u

Description: plastid ribosomal protein bS21c protein | Length: 180

No structure alignment results are available for 5MMJ.u explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains v

Description: 30S ribosomal protein 2, chloroplastic protein | Length: 260

No structure alignment results are available for 5MMJ.v explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains w

Description: 30S ribosomal protein 3, chloroplastic protein | Length: 179

No structure alignment results are available for 5MMJ.w explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #26 | Chains x

Description: 30S ribosomal protein S31, chloroplastic protein | Length: 101

No structure alignment results are available for 5MMJ.x explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains y

Description: Ribosome-binding factor PSRP1, chloroplastic protein | Length: 302

No structure alignment results are available for 5MMJ.y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains a

Description: 16S ribosomal RNA rna | Length: 1491

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains b

Description: 30S ribosomal protein S2, chloroplastic protein | Length: 236

No structure alignment results are available for 5MMJ.b explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #5 | Chains c

Description: 30S ribosomal protein S3, chloroplastic protein | Length: 218

No structure alignment results are available for 5MMJ.c explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains d

Description: 30S ribosomal protein S4, chloroplastic protein | Length: 201

No structure alignment results are available for 5MMJ.d explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #7 | Chains e

Description: 30S ribosomal protein S5, chloroplastic protein | Length: 308

No structure alignment results are available for 5MMJ.e explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains f

Description: plastid ribosomal protein bS6c protein | Length: 211

No structure alignment results are available for 5MMJ.f explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains g

Description: 30S ribosomal protein S7, chloroplastic protein | Length: 155

No structure alignment results are available for 5MMJ.g explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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References