Structural Similarities for the Entities in PDB 5M3J

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: Polymerase acidic protein protein | Length: 751

No structure alignment results are available for 5M3J.A explicitly.

It is represented by chain 4WRT.A which is 100% sequence identical.

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Entity #2 | Chains B

Description: RNA-directed RNA polymerase catalytic subunit protein | Length: 772

No structure alignment results are available for 5M3J.B explicitly.

It is represented by chain 4WRT.B which is 100% sequence identical.

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Entity #3 | Chains C

Description: Polymerase basic protein 2 protein | Length: 798

No structure alignment results are available for 5M3J.C explicitly.

It is represented by chain 4WRT.C which is 100% sequence identical.

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Entity #4 | Chains R

Description: RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3') rna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains V

Description: RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') rna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains X

Description: DNA-directed RNA polymerase subunit protein | Length: 28

No structure alignment results are available for 5M3J.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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References