5LZB

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)


Structural Similarities for the Entities in PDB 5LZB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains a

Description: 16S ribosomal RNA rna | Length: 1539

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains j

Description: 30S ribosomal protein S10 protein | Length: 98

No structure alignment results are available for 5LZB.j explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains k

Description: 30S ribosomal protein S11 protein | Length: 116

No structure alignment results are available for 5LZB.k explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains l

Description: 30S ribosomal protein S12 protein | Length: 123

No structure alignment results are available for 5LZB.l explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #13 | Chains m

Description: 30S ribosomal protein S13 protein | Length: 114

No structure alignment results are available for 5LZB.m explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains n

Description: 30S ribosomal protein S14 protein | Length: 100

No structure alignment results are available for 5LZB.n explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains o

Description: 30S ribosomal protein S15 protein | Length: 88

No structure alignment results are available for 5LZB.o explicitly.

It is represented by chain 4A5U.B which is 100% sequence identical.

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Entity #16 | Chains p

Description: 30S ribosomal protein S16 protein | Length: 82

No structure alignment results are available for 5LZB.p explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains q

Description: 30S ribosomal protein S17 protein | Length: 80

No structure alignment results are available for 5LZB.q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains r

Description: 30S ribosomal protein S18 protein | Length: 65

No structure alignment results are available for 5LZB.r explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains s

Description: 30S ribosomal protein S19 protein | Length: 79

No structure alignment results are available for 5LZB.s explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains b

Description: 30S ribosomal protein S2 protein | Length: 218

No structure alignment results are available for 5LZB.b explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #20 | Chains t

Description: 30S ribosomal protein S20 protein | Length: 85

No structure alignment results are available for 5LZB.t explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains u

Description: 30S ribosomal protein S21 protein | Length: 65

No structure alignment results are available for 5LZB.u explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains v

Description: fMet-tRNAfMet rna | Length: 77

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #23 | Chains x

Description: SECIS mRNA rna | Length: 48

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #24 | Chains y

Description: Sec-tRNASec rna | Length: 95

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #25 | Chains z

Description: Selenocysteine-specific elongation factor protein | Length: 614

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Entity #26 | Chains A

Description: 23S ribosomal RNA rna | Length: 2903

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #27 | Chains B

Description: 5S ribosomal RNA rna | Length: 120

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #28 | Chains C

Description: 50S ribosomal protein L2 protein | Length: 271

No structure alignment results are available for 5LZB.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains D

Description: 50S ribosomal protein L3 protein | Length: 209

No structure alignment results are available for 5LZB.D explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains c

Description: 30S ribosomal protein S3 protein | Length: 206

No structure alignment results are available for 5LZB.c explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains E

Description: 50S ribosomal protein L4 protein | Length: 201

No structure alignment results are available for 5LZB.E explicitly.

It is represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #31 | Chains F

Description: 50S ribosomal protein L5 protein | Length: 177

No structure alignment results are available for 5LZB.F explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #32 | Chains G

Description: 50S ribosomal protein L6 protein | Length: 176

No structure alignment results are available for 5LZB.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains I

Description: 50S ribosomal protein L11 protein | Length: 141

No structure alignment results are available for 5LZB.I explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

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Entity #34 | Chains H

Description: 50S ribosomal protein L9 protein | Length: 149

No structure alignment results are available for 5LZB.H explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #35 | Chains J

Description: 50S ribosomal protein L13 protein | Length: 142

No structure alignment results are available for 5LZB.J explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #36 | Chains K

Description: 50S ribosomal protein L14 protein | Length: 122

No structure alignment results are available for 5LZB.K explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #37 | Chains L

Description: 50S ribosomal protein L15 protein | Length: 143

No structure alignment results are available for 5LZB.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #38 | Chains M

Description: 50S ribosomal protein L16 protein | Length: 136

No structure alignment results are available for 5LZB.M explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #39 | Chains N

Description: 50S ribosomal protein L17 protein | Length: 120

No structure alignment results are available for 5LZB.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains d

Description: 30S ribosomal protein S4 protein | Length: 205

No structure alignment results are available for 5LZB.d explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #40 | Chains O

Description: 50S ribosomal protein L18 protein | Length: 116

No structure alignment results are available for 5LZB.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #41 | Chains P

Description: 50S ribosomal protein L19 protein | Length: 114

No structure alignment results are available for 5LZB.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #42 | Chains Q

Description: 50S ribosomal protein L20 protein | Length: 117

No structure alignment results are available for 5LZB.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains R

Description: 50S ribosomal protein L21 protein | Length: 103

No structure alignment results are available for 5LZB.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #44 | Chains S

Description: 50S ribosomal protein L22 protein | Length: 110

No structure alignment results are available for 5LZB.S explicitly.

It is represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #45 | Chains T

Description: 50S ribosomal protein L23 protein | Length: 93

No structure alignment results are available for 5LZB.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #46 | Chains U

Description: 50S ribosomal protein L24 protein | Length: 102

No structure alignment results are available for 5LZB.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #47 | Chains V

Description: 50S ribosomal protein L25 protein | Length: 94

No structure alignment results are available for 5LZB.V explicitly.

It is represented by chain 1DFU.p which is 100% sequence identical.

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Entity #48 | Chains W

Description: 50S ribosomal protein L27 protein | Length: 75

No structure alignment results are available for 5LZB.W explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #49 | Chains X

Description: 50S ribosomal protein L28 protein | Length: 77

No structure alignment results are available for 5LZB.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains e

Description: 30S ribosomal protein S5 protein | Length: 157

No structure alignment results are available for 5LZB.e explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #50 | Chains Y

Description: 50S ribosomal protein L29 protein | Length: 63

No structure alignment results are available for 5LZB.Y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #51 | Chains Z

Description: 50S ribosomal protein L30 protein | Length: 58

No structure alignment results are available for 5LZB.Z explicitly.

It is represented by chain 1BXY.a which has more than 40% sequence identity.

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Entity #52 | Chains 0

Description: 50S ribosomal protein L32 protein | Length: 56

No structure alignment results are available for 5LZB.0 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #53 | Chains 1

Description: 50S ribosomal protein L33 protein | Length: 50

No structure alignment results are available for 5LZB.1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #54 | Chains 2

Description: 50S ribosomal protein L34 protein | Length: 46

No structure alignment results are available for 5LZB.2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #55 | Chains 3

Description: 50S ribosomal protein L35 protein | Length: 64

No structure alignment results are available for 5LZB.3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #56 | Chains 4

Description: 50S ribosomal protein L36 protein | Length: 38

No structure alignment results are available for 5LZB.4 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #57 | Chains 6

Description: 50S ribosomal protein L31 protein | Length: 66

No structure alignment results are available for 5LZB.6 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #58 | Chains w

Description: CCA 3' end of E-site tRNASec (low occupancy) rna | Length: 3

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains f

Description: 30S ribosomal protein S6 protein | Length: 100

No structure alignment results are available for 5LZB.f explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains g

Description: 30S ribosomal protein S7 protein | Length: 151

No structure alignment results are available for 5LZB.g explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains h

Description: 30S ribosomal protein S8 protein | Length: 129

No structure alignment results are available for 5LZB.h explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #9 | Chains i

Description: 30S ribosomal protein S9 protein | Length: 127

No structure alignment results are available for 5LZB.i explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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References