Structural Similarities for the Entities in PDB 5LSK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A

Description: Protein MIS12 homolog protein | Length: 205

No structure alignment results are available for 5LSK.A explicitly.

It is represented by chain 5LSJ.A which is 100% sequence identical.

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View how chain 5LSK.A compares with the representative chain PDP:5LSJAa. Select a comparison method:


Entity #2 | Chains B

Description: Polyamine-modulated factor 1 protein | Length: 176

No structure alignment results are available for 5LSK.B explicitly.

It is represented by chain 5LSJ.B which is 100% sequence identical.

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Entity #3 | Chains D

Description: Kinetochore-associated protein DSN1 homolog protein | Length: 296

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Entity #4 | Chains N

Description: Kinetochore-associated protein NSL1 homolog protein | Length: 206

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Entity #5 | Chains P

Description: Centromere protein C protein | Length: 76

No structure alignment results are available for 5LSK.P explicitly.

It is represented by chain 5LSJ.P which is 100% sequence identical.

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View how chain 5LSK.P compares with the representative chain PDP:5LSJP_. Select a comparison method:


References