Structural Similarities for the Entities in PDB 5LMT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: 16S ribosomal RNA rna | Length: 1522

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains J

Description: 30S ribosomal protein S10 protein | Length: 105

No structure alignment results are available for 5LMT.J explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains K

Description: 30S ribosomal protein S11 protein | Length: 129

No structure alignment results are available for 5LMT.K explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains L

Description: 30S ribosomal protein S12 protein | Length: 132

No structure alignment results are available for 5LMT.L explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #13 | Chains M

Description: 30S ribosomal protein S13 protein | Length: 126

No structure alignment results are available for 5LMT.M explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains N

Description: 30S ribosomal protein S14 type Z protein | Length: 61

No structure alignment results are available for 5LMT.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains O

Description: 30S ribosomal protein S15 protein | Length: 89

No structure alignment results are available for 5LMT.O explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #16 | Chains P

Description: 30S ribosomal protein S16 protein | Length: 88

No structure alignment results are available for 5LMT.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains Q

Description: 30S ribosomal protein S17 protein | Length: 105

No structure alignment results are available for 5LMT.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains R

Description: 30S ribosomal protein S18 protein | Length: 88

No structure alignment results are available for 5LMT.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains S

Description: 30S ribosomal protein S19 protein | Length: 93

No structure alignment results are available for 5LMT.S explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains B

Description: 30S ribosomal protein S2 protein | Length: 256

No structure alignment results are available for 5LMT.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #20 | Chains T

Description: 30S ribosomal protein S20 protein | Length: 106

No structure alignment results are available for 5LMT.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains V

Description: 30S ribosomal protein Thx protein | Length: 27

No structure alignment results are available for 5LMT.V explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains W

Description: Translation initiation factor IF-1 protein | Length: 72

No structure alignment results are available for 5LMT.W explicitly.

It is represented by chain 4QL5.A which has more than 50% sequence identity.

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Entity #23 | Chains X

Description: Translation initiation factor IF-3 protein | Length: 171

No structure alignment results are available for 5LMT.X explicitly.

It is represented by chain 5ME0.Y which has more than 50% sequence identity.

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Entity #24 | Chains Y

Description: mRNA rna | Length: 42

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #25 | Chains Z

Description: tRNAi rna | Length: 77

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C

Description: 30S ribosomal protein S3 protein | Length: 239

No structure alignment results are available for 5LMT.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains D

Description: 30S ribosomal protein S4 protein | Length: 209

No structure alignment results are available for 5LMT.D explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #5 | Chains E

Description: 30S ribosomal protein S5 protein | Length: 162

No structure alignment results are available for 5LMT.E explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains F

Description: 30S ribosomal protein S6 protein | Length: 101

No structure alignment results are available for 5LMT.F explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #7 | Chains G

Description: 30S ribosomal protein S7 protein | Length: 156

No structure alignment results are available for 5LMT.G explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains H

Description: 30S ribosomal protein S8 protein | Length: 138

No structure alignment results are available for 5LMT.H explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #9 | Chains I

Description: 30S ribosomal protein S9 protein | Length: 128

No structure alignment results are available for 5LMT.I explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References