Structural Similarities for the Entities in PDB 5J9Q

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,E,I

Description: Histone acetyltransferase ESA1 protein | Length: 305

No structure alignment results are available for 5J9Q.A, 5J9Q.E, 5J9Q.I explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #2 | Chains B,F,J

Description: Chromatin modification-related protein EAF6 protein | Length: 113

No structure alignment results are available for 5J9Q.B, 5J9Q.F, 5J9Q.J explicitly.

These chains are represented by chain 5J9T.B which is 100% sequence identical.

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Entity #3 | Chains C,G,N

Description: Enhancer of polycomb-like protein 1 protein | Length: 351

No structure alignment results are available for 5J9Q.C, 5J9Q.G, 5J9Q.N explicitly.

These chains are represented by chain 5J9U.C which is 100% sequence identical.

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Entity #4 | Chains D,H,K

Description: Chromatin modification-related protein YNG2 protein | Length: 120

No structure alignment results are available for 5J9Q.D, 5J9Q.H, 5J9Q.K explicitly.

These chains are represented by chain 5J9T.D which is 100% sequence identical.

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Entity #5 | Chains L,M,O

Description: Htz1 protein | Length: 10

This entity is too short to be considered for the all vs. all structure alignments.


References