5IT7

Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2


Structural Similarities for the Entities in PDB 5IT7

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 5

Description: 25S ribosomal RNA hybrid | Length: 3270

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains GG

Description: KLLA0E00573p protein | Length: 233

No structure alignment results are available for 5IT7.GG explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #11 | Chains HH

Description: KLLA0F04499p protein | Length: 191

No structure alignment results are available for 5IT7.HH explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #12 | Chains II

Description: KLLA0D05643p protein | Length: 216

No structure alignment results are available for 5IT7.II explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #13 | Chains JJ

Description: KLLA0F08261p protein | Length: 168

No structure alignment results are available for 5IT7.JJ explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #14 | Chains LL

Description: 60S ribosomal protein L13 protein | Length: 197

No structure alignment results are available for 5IT7.LL explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #15 | Chains MM

Description: KLLA0B13409p protein | Length: 136

No structure alignment results are available for 5IT7.MM explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #16 | Chains NN

Description: Ribosomal protein L15 protein | Length: 202

No structure alignment results are available for 5IT7.NN explicitly.

It is represented by chain 4C2V.A which has more than 40% sequence identity.

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Entity #17 | Chains OO

Description: KLLA0F04675p protein | Length: 198

No structure alignment results are available for 5IT7.OO explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #18 | Chains PP

Description: KLLA0A06336p protein | Length: 180

No structure alignment results are available for 5IT7.PP explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #19 | Chains QQ

Description: KLLA0A07227p protein | Length: 184

No structure alignment results are available for 5IT7.QQ explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #2 | Chains 7

Description: 5S ribosomal RNA rna | Length: 121

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains RR

Description: KLLA0E12453p protein | Length: 188

No structure alignment results are available for 5IT7.RR explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #21 | Chains SS

Description: 60S ribosomal protein L20 protein | Length: 169

No structure alignment results are available for 5IT7.SS explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #22 | Chains TT

Description: KLLA0E23651p protein | Length: 158

No structure alignment results are available for 5IT7.TT explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #23 | Chains UU

Description: KLLA0D05181p protein | Length: 100

No structure alignment results are available for 5IT7.UU explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #24 | Chains VV

Description: KLLA0E06997p protein | Length: 132

No structure alignment results are available for 5IT7.VV explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #25 | Chains WW

Description: 60S ribosomal protein L24 protein | Length: 62

No structure alignment results are available for 5IT7.WW explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #26 | Chains XX

Description: 60S ribosomal protein L25 protein | Length: 121

No structure alignment results are available for 5IT7.XX explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #27 | Chains YY

Description: KLLA0B05742p protein | Length: 125

No structure alignment results are available for 5IT7.YY explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #28 | Chains ZZ

Description: KLLA0E03455p protein | Length: 134

No structure alignment results are available for 5IT7.ZZ explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #29 | Chains aa

Description: RPL28 protein | Length: 147

No structure alignment results are available for 5IT7.aa explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #3 | Chains 8

Description: 5.8S ribosomal RNA rna | Length: 157

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains bb

Description: KLLA0D16071p protein | Length: 57

No structure alignment results are available for 5IT7.bb explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #31 | Chains cc

Description: 60S ribosomal protein L30 protein | Length: 97

No structure alignment results are available for 5IT7.cc explicitly.

It is represented by chain 3VI6.A which has more than 50% sequence identity.

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Entity #32 | Chains dd

Description: KLLA0B02937p protein | Length: 106

No structure alignment results are available for 5IT7.dd explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #33 | Chains ee

Description: KLLA0E06843p protein | Length: 122

No structure alignment results are available for 5IT7.ee explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #34 | Chains ff

Description: KLLA0D07405p protein | Length: 105

No structure alignment results are available for 5IT7.ff explicitly.

It is represented by chain 5JVI.E which has more than 40% sequence identity.

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Entity #35 | Chains gg

Description: KLLA0C08371p protein | Length: 121

No structure alignment results are available for 5IT7.gg explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #36 | Chains hh

Description: KLLA0F05247p protein | Length: 116

No structure alignment results are available for 5IT7.hh explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #37 | Chains ii

Description: 60S ribosomal protein L36 protein | Length: 98

No structure alignment results are available for 5IT7.ii explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #38 | Chains jj

Description: Ribosomal protein L37 protein | Length: 85

No structure alignment results are available for 5IT7.jj explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #39 | Chains kk

Description: KLLA0C18216p protein | Length: 76

No structure alignment results are available for 5IT7.kk explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #4 | Chains AA

Description: KLLA0D16027p protein | Length: 249

No structure alignment results are available for 5IT7.AA explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #40 | Chains ll

Description: 60S ribosomal protein L39 protein | Length: 49

No structure alignment results are available for 5IT7.ll explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #41 | Chains mm

Description: Ubiquitin fusion protein protein | Length: 51

No structure alignment results are available for 5IT7.mm explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #42 | Chains nn

Description: 60S ribosomal protein L41-A protein | Length: 25

No structure alignment results are available for 5IT7.nn explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains oo

Description: 60S ribosomal protein L44 protein | Length: 101

No structure alignment results are available for 5IT7.oo explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #44 | Chains pp

Description: KLLA0E05941p protein | Length: 87

No structure alignment results are available for 5IT7.pp explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #45 | Chains qq

Description: Ribosomal protein protein | Length: 217

No structure alignment results are available for 5IT7.qq explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #46 | Chains rr

Description: 60S acidic ribosomal protein P0 protein | Length: 195

No structure alignment results are available for 5IT7.rr explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #47 | Chains KK

Description: uL11 protein | Length: 147

Entity #48 | Chains A

Description: 40S ribosomal protein S0 protein | Length: 206

No structure alignment results are available for 5IT7.A explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #49 | Chains B

Description: 40S ribosomal protein S1 protein | Length: 214

No structure alignment results are available for 5IT7.B explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains BB

Description: 60S ribosomal protein L3 protein | Length: 384

No structure alignment results are available for 5IT7.BB explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #50 | Chains C

Description: KLLA0F09812p protein | Length: 217

No structure alignment results are available for 5IT7.C explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #51 | Chains D

Description: KLLA0D08305p protein | Length: 223

No structure alignment results are available for 5IT7.D explicitly.

It is represented by chain 4BSZ.A which has more than 70% sequence identity.

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Entity #52 | Chains E

Description: 40S ribosomal protein S4 protein | Length: 260

No structure alignment results are available for 5IT7.E explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #53 | Chains F

Description: KLLA0D10659p protein | Length: 206

No structure alignment results are available for 5IT7.F explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #54 | Chains G

Description: 40S ribosomal protein S6 protein | Length: 226

No structure alignment results are available for 5IT7.G explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #55 | Chains H

Description: KLLA0C13519p protein | Length: 184

No structure alignment results are available for 5IT7.H explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #56 | Chains I

Description: 40S ribosomal protein S8 protein | Length: 200

No structure alignment results are available for 5IT7.I explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #57 | Chains J

Description: KLLA0E23673p protein | Length: 182

No structure alignment results are available for 5IT7.J explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #58 | Chains K

Description: KLLA0B08173p protein | Length: 96

No structure alignment results are available for 5IT7.K explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #59 | Chains L

Description: KLLA0A10483p protein | Length: 155

No structure alignment results are available for 5IT7.L explicitly.

It is represented by chain 2JHF.a which has more than 40% sequence identity.

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Entity #6 | Chains CC

Description: KLLA0B07139p protein | Length: 360

No structure alignment results are available for 5IT7.CC explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #60 | Chains M

Description: 40S ribosomal protein S12 protein | Length: 122

No structure alignment results are available for 5IT7.M explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #61 | Chains N

Description: KLLA0F18040p protein | Length: 150

No structure alignment results are available for 5IT7.N explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #62 | Chains O

Description: 40S ribosomal protein S14 protein | Length: 127

No structure alignment results are available for 5IT7.O explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #63 | Chains P

Description: KLLA0F07843p protein | Length: 123

No structure alignment results are available for 5IT7.P explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #64 | Chains Q

Description: 40S ribosomal protein S16 protein | Length: 141

No structure alignment results are available for 5IT7.Q explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #65 | Chains R

Description: KLLA0B01474p protein | Length: 129

No structure alignment results are available for 5IT7.R explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #66 | Chains S

Description: KLLA0B01562p protein | Length: 145

No structure alignment results are available for 5IT7.S explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #67 | Chains T

Description: KLLA0A07194p protein | Length: 143

No structure alignment results are available for 5IT7.T explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #68 | Chains U

Description: KLLA0F25542p protein | Length: 106

No structure alignment results are available for 5IT7.U explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #69 | Chains V

Description: 40S ribosomal protein S21 protein | Length: 87

No structure alignment results are available for 5IT7.V explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #7 | Chains DD

Description: KLLA0D06941p protein | Length: 295

No structure alignment results are available for 5IT7.DD explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #70 | Chains W

Description: 40S ribosomal protein S22 protein | Length: 129

No structure alignment results are available for 5IT7.W explicitly.

It is represented by chain 1I6U.a which has more than 40% sequence identity.

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Entity #71 | Chains X

Description: RPS23 protein | Length: 145

No structure alignment results are available for 5IT7.X explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #72 | Chains Y

Description: 40S ribosomal protein S24 protein | Length: 134

No structure alignment results are available for 5IT7.Y explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #73 | Chains Z

Description: KLLA0B06182p protein | Length: 70

No structure alignment results are available for 5IT7.Z explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #74 | Chains a

Description: KLLA0D05115p protein | Length: 100

No structure alignment results are available for 5IT7.a explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #75 | Chains b

Description: 40S ribosomal protein S27 protein | Length: 82

No structure alignment results are available for 5IT7.b explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #76 | Chains c

Description: 40S ribosomal protein S28 protein | Length: 63

No structure alignment results are available for 5IT7.c explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #77 | Chains d

Description: 40S ribosomal protein S29 protein | Length: 53

No structure alignment results are available for 5IT7.d explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #78 | Chains e

Description: KLLA0C04809p protein | Length: 55

No structure alignment results are available for 5IT7.e explicitly.

It is represented by chain 3FIL.A which has more than 50% sequence identity.

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