5IMQ

Structure of ribosome bound to cofactor at 3.8 angstrom resolution


Structural Similarities for the Entities in PDB 5IMQ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 1

Description: 50S ribosomal protein L36 protein | Length: 37

No structure alignment results are available for 5IMQ.1 explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.1 compares with the representative chain xxxx. Select a comparison method:


Entity #10 | Chains G

Description: 30S ribosomal protein S3 protein | Length: 239

No structure alignment results are available for 5IMQ.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.G compares with the representative chain xxxx. Select a comparison method:


Entity #11 | Chains H

Description: 30S ribosomal protein S4 protein | Length: 209

No structure alignment results are available for 5IMQ.H explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.H compares with the representative chain xxxx. Select a comparison method:


Entity #12 | Chains I

Description: 30S ribosomal protein S5 protein | Length: 162

No structure alignment results are available for 5IMQ.I explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.I compares with the representative chain xxxx. Select a comparison method:


Entity #13 | Chains J

Description: 30S ribosomal protein S6 protein | Length: 101

No structure alignment results are available for 5IMQ.J explicitly.

It is represented by chain 1CQM.a which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.J compares with the representative chain d1cqma_. Select a comparison method:


Entity #14 | Chains K

Description: 30S ribosomal protein S7 protein | Length: 156

No structure alignment results are available for 5IMQ.K explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.K compares with the representative chain xxxx. Select a comparison method:


Entity #15 | Chains L

Description: 30S ribosomal protein S8 protein | Length: 138

No structure alignment results are available for 5IMQ.L explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.L compares with the representative chain d1seia_. Select a comparison method:


Entity #16 | Chains M

Description: 30S ribosomal protein S9 protein | Length: 128

No structure alignment results are available for 5IMQ.M explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.M compares with the representative chain xxxx. Select a comparison method:


Entity #17 | Chains N

Description: 30S ribosomal protein S10 protein | Length: 105

No structure alignment results are available for 5IMQ.N explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.N compares with the representative chain xxxx. Select a comparison method:


Entity #18 | Chains O

Description: 30S ribosomal protein S11 protein | Length: 129

No structure alignment results are available for 5IMQ.O explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.O compares with the representative chain xxxx. Select a comparison method:


Entity #19 | Chains P

Description: 30S ribosomal protein S12 protein | Length: 132

No structure alignment results are available for 5IMQ.P explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.P compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains 2

Description: 50S ribosomal protein L10 protein | Length: 173

No structure alignment results are available for 5IMQ.2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.2 compares with the representative chain xxxx. Select a comparison method:


Entity #20 | Chains Q

Description: 30S ribosomal protein S13 protein | Length: 126

No structure alignment results are available for 5IMQ.Q explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.Q compares with the representative chain xxxx. Select a comparison method:


Entity #21 | Chains R

Description: 30S ribosomal protein S14 type Z protein | Length: 61

No structure alignment results are available for 5IMQ.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.R compares with the representative chain xxxx. Select a comparison method:


Entity #22 | Chains S

Description: 30S ribosomal protein S15 protein | Length: 89

No structure alignment results are available for 5IMQ.S explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.S compares with the representative chain PDP:4A5UBa. Select a comparison method:


Entity #23 | Chains T

Description: 30S ribosomal protein S16 protein | Length: 88

No structure alignment results are available for 5IMQ.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.T compares with the representative chain xxxx. Select a comparison method:


Entity #24 | Chains U

Description: 30S ribosomal protein S17 protein | Length: 105

No structure alignment results are available for 5IMQ.U explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.U compares with the representative chain xxxx. Select a comparison method:


Entity #25 | Chains V

Description: 30S ribosomal protein S18 protein | Length: 88

No structure alignment results are available for 5IMQ.V explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.V compares with the representative chain xxxx. Select a comparison method:


Entity #26 | Chains W

Description: 30S ribosomal protein S19 protein | Length: 93

No structure alignment results are available for 5IMQ.W explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.W compares with the representative chain xxxx. Select a comparison method:


Entity #27 | Chains X

Description: 30S ribosomal protein S20 protein | Length: 106

No structure alignment results are available for 5IMQ.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.X compares with the representative chain xxxx. Select a comparison method:


Entity #28 | Chains Y

Description: 30S ribosomal protein Thx protein | Length: 27

No structure alignment results are available for 5IMQ.Y explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.Y compares with the representative chain xxxx. Select a comparison method:


Entity #29 | Chains Z

Description: 50S ribosomal protein L1 protein | Length: 229

No structure alignment results are available for 5IMQ.Z explicitly.

It is represented by chain 4REO.A which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.Z compares with the representative chain PDP:4REOAa. Select a comparison method:


Entity #3 | Chains 3

Description: 50S ribosomal protein L11 protein | Length: 147

No structure alignment results are available for 5IMQ.3 explicitly.

It is represented by chain 3EGV.b which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.3 compares with the representative chain d3egvb1. Select a comparison method:


Entity #30 | Chains a

Description: 50S ribosomal protein L2 protein | Length: 276

No structure alignment results are available for 5IMQ.a explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.a compares with the representative chain xxxx. Select a comparison method:


Entity #31 | Chains b

Description: 50S ribosomal protein L3 protein | Length: 206

No structure alignment results are available for 5IMQ.b explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.b compares with the representative chain xxxx. Select a comparison method:


Entity #32 | Chains c

Description: 50S ribosomal protein L4 protein | Length: 210

No structure alignment results are available for 5IMQ.c explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.c compares with the representative chain xxxx. Select a comparison method:


Entity #33 | Chains d

Description: 50S ribosomal protein L5 protein | Length: 182

No structure alignment results are available for 5IMQ.d explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.d compares with the representative chain d1iq4a_. Select a comparison method:


Entity #34 | Chains e

Description: 50S ribosomal protein L6 protein | Length: 180

No structure alignment results are available for 5IMQ.e explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.e compares with the representative chain xxxx. Select a comparison method:


Entity #35 | Chains f

Description: 50S ribosomal protein L13 protein | Length: 140

No structure alignment results are available for 5IMQ.f explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.f compares with the representative chain xxxx. Select a comparison method:


Entity #36 | Chains g

Description: 50S ribosomal protein L14 protein | Length: 122

No structure alignment results are available for 5IMQ.g explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.g compares with the representative chain d1whia_. Select a comparison method:


Entity #37 | Chains h

Description: 50S ribosomal protein L15 protein | Length: 150

No structure alignment results are available for 5IMQ.h explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.h compares with the representative chain xxxx. Select a comparison method:


Entity #38 | Chains i

Description: 50S ribosomal protein L16 protein | Length: 141

No structure alignment results are available for 5IMQ.i explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.i compares with the representative chain xxxx. Select a comparison method:


Entity #39 | Chains j

Description: 50S ribosomal protein L17 protein | Length: 118

No structure alignment results are available for 5IMQ.j explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.j compares with the representative chain xxxx. Select a comparison method:


Entity #4 | Chains 4

Description: P- site tRNA rna | Length: 77

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #40 | Chains k

Description: 50S ribosomal protein L18 protein | Length: 112

No structure alignment results are available for 5IMQ.k explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.k compares with the representative chain xxxx. Select a comparison method:


Entity #41 | Chains l

Description: 50S ribosomal protein L19 protein | Length: 146

No structure alignment results are available for 5IMQ.l explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.l compares with the representative chain xxxx. Select a comparison method:


Entity #42 | Chains m

Description: 50S ribosomal protein L20 protein | Length: 118

No structure alignment results are available for 5IMQ.m explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.m compares with the representative chain xxxx. Select a comparison method:


Entity #43 | Chains n

Description: 50S ribosomal protein L21 protein | Length: 101

No structure alignment results are available for 5IMQ.n explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.n compares with the representative chain xxxx. Select a comparison method:


Entity #44 | Chains o

Description: 50S ribosomal protein L22 protein | Length: 113

No structure alignment results are available for 5IMQ.o explicitly.

It is represented by chain 1I4J.a which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.o compares with the representative chain d1i4ja_. Select a comparison method:


Entity #45 | Chains p

Description: 50S ribosomal protein L23 protein | Length: 96

No structure alignment results are available for 5IMQ.p explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.p compares with the representative chain xxxx. Select a comparison method:


Entity #46 | Chains q

Description: 50S ribosomal protein L24 protein | Length: 110

No structure alignment results are available for 5IMQ.q explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.q compares with the representative chain xxxx. Select a comparison method:


Entity #47 | Chains r

Description: 50S ribosomal protein L25 protein | Length: 206

No structure alignment results are available for 5IMQ.r explicitly.

It is represented by chain 1FEU.a which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.r compares with the representative chain d1feua_. Select a comparison method:


Entity #48 | Chains s

Description: 50S ribosomal protein L27 protein | Length: 85

No structure alignment results are available for 5IMQ.s explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.s compares with the representative chain xxxx. Select a comparison method:


Entity #49 | Chains t

Description: 50S ribosomal protein L29 protein | Length: 67

No structure alignment results are available for 5IMQ.t explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.t compares with the representative chain xxxx. Select a comparison method:


Entity #5 | Chains 5

Description: E site tRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #50 | Chains u

Description: 50S ribosomal protein L30 protein | Length: 60

No structure alignment results are available for 5IMQ.u explicitly.

It is represented by chain 1BXY.a which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.u compares with the representative chain d1bxya_. Select a comparison method:


Entity #51 | Chains v

Description: 50S ribosomal protein L31 protein | Length: 71

No structure alignment results are available for 5IMQ.v explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.v compares with the representative chain xxxx. Select a comparison method:


Entity #52 | Chains w

Description: 50S ribosomal protein L32 protein | Length: 60

No structure alignment results are available for 5IMQ.w explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.w compares with the representative chain xxxx. Select a comparison method:


Entity #53 | Chains x

Description: 50S ribosomal protein L33 protein | Length: 54

No structure alignment results are available for 5IMQ.x explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.x compares with the representative chain xxxx. Select a comparison method:


Entity #54 | Chains y

Description: 50S ribosomal protein L34 protein | Length: 49

No structure alignment results are available for 5IMQ.y explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.y compares with the representative chain xxxx. Select a comparison method:


Entity #55 | Chains z

Description: 50S ribosomal protein L35 protein | Length: 65

No structure alignment results are available for 5IMQ.z explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5IMQ.z compares with the representative chain xxxx. Select a comparison method:


Entity #56 | Chains B

Description: Elongation factor 4 protein | Length: 610

No structure alignment results are available for 5IMQ.B explicitly.

It is represented by chain 2YWE.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.B compares with the representative chain PDP:2YWEAa. Select a comparison method:


Entity #6 | Chains A

Description: 16S ribosomal RNA rna | Length: 1522

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #7 | Chains D

Description: 23S ribosomal RNA rna | Length: 2893

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #8 | Chains E

Description: 5S ribosomal RNA rna | Length: 123

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #9 | Chains F

Description: 30S ribosomal protein S2 protein | Length: 256

No structure alignment results are available for 5IMQ.F explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5IMQ.F compares with the representative chain xxxx. Select a comparison method:


References