5IB8

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site


Structural Similarities for the Entities in PDB 5IB8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 13,1G

Description: 16S ribosomal RNA rna | Length: 1522

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains 1A,1I

Description: 30S ribosomal protein S10 protein | Length: 105

No structure alignment results are available for 5IB8.1A, 5IB8.1I explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains 2A,2I

Description: 30S ribosomal protein S11 protein | Length: 129

No structure alignment results are available for 5IB8.2A, 5IB8.2I explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains 3A,3I

Description: 30S ribosomal protein S12 protein | Length: 132

No structure alignment results are available for 5IB8.3A, 5IB8.3I explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #13 | Chains 4A,4I

Description: 30S ribosomal protein S13 protein | Length: 126

No structure alignment results are available for 5IB8.4A, 5IB8.4I explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains 5A,5I

Description: 30S ribosomal protein S14 type Z protein | Length: 61

No structure alignment results are available for 5IB8.5A, 5IB8.5I explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains 6A,6I

Description: 30S ribosomal protein S15 protein | Length: 89

No structure alignment results are available for 5IB8.6A, 5IB8.6I explicitly.

These chains are represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #16 | Chains 7A,7I

Description: 30S ribosomal protein S16 protein | Length: 88

No structure alignment results are available for 5IB8.7A, 5IB8.7I explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains 8A,8I

Description: 30S ribosomal protein S17 protein | Length: 105

No structure alignment results are available for 5IB8.8A, 5IB8.8I explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains 9A,9I

Description: 30S ribosomal protein S18 protein | Length: 88

No structure alignment results are available for 5IB8.9A, 5IB8.9I explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains AA,AI

Description: 30S ribosomal protein S19 protein | Length: 93

No structure alignment results are available for 5IB8.AA, 5IB8.AI explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains 12,1E

Description: 30S ribosomal protein S2 protein | Length: 256

No structure alignment results are available for 5IB8.12, 5IB8.1E explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #20 | Chains BA,BI

Description: 30S ribosomal protein S20 protein | Length: 106

No structure alignment results are available for 5IB8.BA, 5IB8.BI explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains 1B,1F

Description: 30S ribosomal protein Thx protein | Length: 27

No structure alignment results are available for 5IB8.1B, 5IB8.1F explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains 1K

Description: tRNALys rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #23 | Chains 2K,2L

Description: tRNAfMet rna | Length: 77

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #24 | Chains 3K,3L

Description: tRNALys rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #25 | Chains 4K,4L

Description: mRNA rna | Length: 30

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #26 | Chains 14,1H

Description: 23S ribosomal RNA rna | Length: 2917

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #27 | Chains 16,1J

Description: 5S ribosomal RNA rna | Length: 122

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #28 | Chains 71

Description: 50S ribosomal protein L1 protein | Length: 229

No structure alignment results are available for 5IB8.71 explicitly.

It is represented by chain 4REO.A which has more than 95% sequence identity.

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Entity #29 | Chains 11,19

Description: 50S ribosomal protein L2 protein | Length: 276

No structure alignment results are available for 5IB8.11, 5IB8.19 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains 22,2E

Description: 30S ribosomal protein S3 protein | Length: 239

No structure alignment results are available for 5IB8.22, 5IB8.2E explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains 21,29

Description: 50S ribosomal protein L3 protein | Length: 206

No structure alignment results are available for 5IB8.21, 5IB8.29 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains 31,39

Description: 50S ribosomal protein L4 protein | Length: 210

No structure alignment results are available for 5IB8.31, 5IB8.39 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains 41,49

Description: 50S ribosomal protein L5 protein | Length: 182

No structure alignment results are available for 5IB8.41, 5IB8.49 explicitly.

These chains are represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #33 | Chains 51,59

Description: 50S ribosomal protein L6 protein | Length: 180

No structure alignment results are available for 5IB8.51, 5IB8.59 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #34 | Chains 61,69

Description: 50S ribosomal protein L9 protein | Length: 148

No structure alignment results are available for 5IB8.61, 5IB8.69 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #35 | Chains 15,58

Description: 50S ribosomal protein L13 protein | Length: 140

No structure alignment results are available for 5IB8.15, 5IB8.58 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #36 | Chains 25,68

Description: 50S ribosomal protein L14 protein | Length: 122

No structure alignment results are available for 5IB8.25, 5IB8.68 explicitly.

These chains are represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #37 | Chains 35,78

Description: 50S ribosomal protein L15 protein | Length: 150

No structure alignment results are available for 5IB8.35, 5IB8.78 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #38 | Chains 45,88

Description: 50S ribosomal protein L16 protein | Length: 141

No structure alignment results are available for 5IB8.45, 5IB8.88 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #39 | Chains 55,98

Description: 50S ribosomal protein L17 protein | Length: 118

No structure alignment results are available for 5IB8.55, 5IB8.98 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains 32,3E

Description: 30S ribosomal protein S4 protein | Length: 209

No structure alignment results are available for 5IB8.32, 5IB8.3E explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #40 | Chains 65,A8

Description: 50S ribosomal protein L18 protein | Length: 112

No structure alignment results are available for 5IB8.65, 5IB8.A8 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #41 | Chains 75,B8

Description: 50S ribosomal protein L19 protein | Length: 146

No structure alignment results are available for 5IB8.75, 5IB8.B8 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #42 | Chains 85,C8

Description: 50S ribosomal protein L20 protein | Length: 118

No structure alignment results are available for 5IB8.85, 5IB8.C8 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #43 | Chains 95,D8

Description: 50S ribosomal protein L21 protein | Length: 101

No structure alignment results are available for 5IB8.95, 5IB8.D8 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #44 | Chains A5,E8

Description: 50S ribosomal protein L22 protein | Length: 113

No structure alignment results are available for 5IB8.A5, 5IB8.E8 explicitly.

These chains are represented by chain 1I4J.a which has more than 95% sequence identity.

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Entity #45 | Chains B5,F8

Description: 50S ribosomal protein L23 protein | Length: 96

No structure alignment results are available for 5IB8.B5, 5IB8.F8 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #46 | Chains C5,G8

Description: 50S ribosomal protein L24 protein | Length: 110

No structure alignment results are available for 5IB8.C5, 5IB8.G8 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #47 | Chains D5,H8

Description: 50S ribosomal protein L25 protein | Length: 206

No structure alignment results are available for 5IB8.D5, 5IB8.H8 explicitly.

These chains are represented by chain 1FEU.a which has more than 95% sequence identity.

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Entity #48 | Chains E5,I8

Description: 50S ribosomal protein L27 protein | Length: 85

No structure alignment results are available for 5IB8.E5, 5IB8.I8 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #49 | Chains F5,J8

Description: 50S ribosomal protein L28 protein | Length: 98

No structure alignment results are available for 5IB8.F5, 5IB8.J8 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains 42,4E

Description: 30S ribosomal protein S5 protein | Length: 162

No structure alignment results are available for 5IB8.42, 5IB8.4E explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #50 | Chains G5,K8

Description: 50S ribosomal protein L29 protein | Length: 72

No structure alignment results are available for 5IB8.G5, 5IB8.K8 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #51 | Chains H5,L8

Description: 50S ribosomal protein L30 protein | Length: 60

No structure alignment results are available for 5IB8.H5, 5IB8.L8 explicitly.

These chains are represented by chain 1BXY.a which is 100% sequence identical.

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Entity #52 | Chains M8

Description: 50S ribosomal protein L31 protein | Length: 71

No structure alignment results are available for 5IB8.M8 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #53 | Chains J5,N8

Description: 50S ribosomal protein L32 protein | Length: 60

No structure alignment results are available for 5IB8.J5, 5IB8.N8 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #54 | Chains L5,P8

Description: 50S ribosomal protein L34 protein | Length: 49

No structure alignment results are available for 5IB8.L5, 5IB8.P8 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #55 | Chains M5,Q8

Description: 50S ribosomal protein L35 protein | Length: 65

No structure alignment results are available for 5IB8.M5, 5IB8.Q8 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #56 | Chains 1L

Description: tRNALys rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains 52,5E

Description: 30S ribosomal protein S6 protein | Length: 101

No structure alignment results are available for 5IB8.52, 5IB8.5E explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #7 | Chains 62,6E

Description: 30S ribosomal protein S7 protein | Length: 156

No structure alignment results are available for 5IB8.62, 5IB8.6E explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains 72,7E

Description: 30S ribosomal protein S8 protein | Length: 138

No structure alignment results are available for 5IB8.72, 5IB8.7E explicitly.

These chains are represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #9 | Chains 82,8E

Description: 30S ribosomal protein S9 protein | Length: 128

No structure alignment results are available for 5IB8.82, 5IB8.8E explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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References