Structural Similarities for the Entities in PDB 5I8H

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A,C

Description: BG505 SOSIP.664 gp120 protein | Length: 481

No structure alignment results are available for 5I8H.A, 5I8H.C explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #2 | Chains B,D

Description: BG505 SOSIP.664 gp41 protein | Length: 153

No structure alignment results are available for 5I8H.B, 5I8H.D explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #3 | Chains J,L

Description: PGT122 Fab light chain protein | Length: 210

No structure alignment results are available for 5I8H.J, 5I8H.L explicitly.

These chains are represented by chain 4NZU.L which has more than 50% sequence identity.

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Entity #4 | Chains E,G

Description: VRC34.01 Fab heavy chain protein | Length: 223

No structure alignment results are available for 5I8H.E, 5I8H.G explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains F,H

Description: VRC34.01 Fab light chain protein | Length: 212

No structure alignment results are available for 5I8H.F, 5I8H.H explicitly.

These chains are represented by chain 4NZU.L which has more than 90% sequence identity.

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Entity #6 | Chains I,K

Description: PGT122 Fab heavy chain protein | Length: 235

No structure alignment results are available for 5I8H.I, 5I8H.K explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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References