Structural Similarities for the Entities in PDB 5HKH

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,C

Description: Ubiquitin-fold modifier 1 protein | Length: 86

No structure alignment results are available for 5HKH.A, 5HKH.C explicitly.

These chains are represented by chain 5IAA.C which is 100% sequence identical.

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View how chain 5HKH.C compares with the representative chain PDP:5IAACa. Select a comparison method:

Entity #2 | Chains B

Description: ASP-ASN-GLU-TRP-GLY-ILE-GLU-LEU-VAL protein | Length: 9

This entity is too short to be considered for the all vs. all structure alignments.