Structural Similarities for the Entities in PDB 5GAR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B,C

Description: V-type ATP synthase alpha chain protein | Length: 577

No structure alignment results are available for 5GAR.A, 5GAR.B, 5GAR.C explicitly.

These chains are represented by chain 5BN3.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5GAR.C compares with the representative chain PDP:5BN3Aa. Select a comparison method:


Entity #2 | Chains D,E,F

Description: V-type ATP synthase beta chain protein | Length: 457

No structure alignment results are available for 5GAR.D, 5GAR.E, 5GAR.F explicitly.

These chains are represented by chain 2C61.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 5GAR.F compares with the representative chain PDP:2C61Aa. Select a comparison method:


Entity #3 | Chains G,H

Description: V-type ATP synthase subunit E protein | Length: 186

No structure alignment results are available for 5GAR.G, 5GAR.H explicitly.

These chains are represented by chain 3V6I.A which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 5GAR.H compares with the representative chain PDP:3V6IAa. Select a comparison method:


Entity #4 | Chains I,J

Description: V-type ATPase subunit G protein | Length: 105

No structure alignment results are available for 5GAR.I, 5GAR.J explicitly.

These chains are represented by chain 3V6I.B which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5GAR.J compares with the representative chain PDP:3V6IBa. Select a comparison method:


Entity #5 | Chains K

Description: V-type ATP synthase subunit D protein | Length: 210

No structure alignment results are available for 5GAR.K explicitly.

It is represented by chain 3W3A.G which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5GAR.K compares with the representative chain PDP:3W3AGa. Select a comparison method:


Entity #6 | Chains L

Description: V-type ATP synthase subunit F protein | Length: 100

No structure alignment results are available for 5GAR.L explicitly.

It is represented by chain 2D00.a which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5GAR.L compares with the representative chain d2d00a1. Select a comparison method:


Entity #7 | Chains M

Description: V-type ATP synthase subunit C protein | Length: 323

No structure alignment results are available for 5GAR.M explicitly.

It is represented by chain 1V9M.a which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5GAR.M compares with the representative chain d1v9ma_. Select a comparison method:


Entity #8 | Chains N

Description: Archaeal/vacuolar-type H+-ATPase subunit I protein | Length: 652

No structure alignment results are available for 5GAR.N explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 5GAR.N compares with the representative chain xxxx. Select a comparison method:


Entity #9 | Chains O,P,Q,R,S,T,U,V,W,X,Y,Z

Description: Vacuolar type ATP synthase subunit protein | Length: 99

No structure alignment results are available for 5GAR.O, 5GAR.P, 5GAR.Q, 5GAR.R, 5GAR.S, 5GAR.T, 5GAR.U, 5GAR.V, 5GAR.W, 5GAR.X, 5GAR.Y, 5GAR.Z explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 5GAR.Z compares with the representative chain xxxx. Select a comparison method:


References