Structural Similarities for the Entities in PDB 5EDV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B

Description: E3 ubiquitin-protein ligase RNF31 protein | Length: 380

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Entity #2 | Chains C,D,I

Description: Ubiquitin-conjugating enzyme E2 D2 protein | Length: 149

No structure alignment results are available for 5EDV.C, 5EDV.D, 5EDV.I explicitly.

These chains are represented by chain 1Z2U.a which has more than 90% sequence identity.

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View how chain 5EDV.I compares with the representative chain d1z2ua1. Select a comparison method:


Entity #3 | Chains E,F,G,H

Description: Polyubiquitin-B protein | Length: 76

No structure alignment results are available for 5EDV.E, 5EDV.F, 5EDV.G, 5EDV.H explicitly.

These chains are represented by chain 5TOG.A which has more than 70% sequence identity.

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View how chain 5EDV.H compares with the representative chain PDP:5TOGAa. Select a comparison method:


References