Structural Similarities for the Entities in PDB 5DKP

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C,D,E,F,G,H,I,J,K,L,M,N,a,b,c,d,e,f,g,h,i,j,k,l,m,n

Description: ATP-dependent Clp protease proteolytic subunit protein | Length: 206

No structure alignment results are available for 5DKP.A, 5DKP.B, 5DKP.C, 5DKP.D, 5DKP.E, 5DKP.F, 5DKP.G, 5DKP.H, 5DKP.I, 5DKP.J, 5DKP.K, 5DKP.L, 5DKP.M, 5DKP.N, 5DKP.a, 5DKP.b, 5DKP.c, 5DKP.d, 5DKP.e, 5DKP.f, 5DKP.g, 5DKP.h, 5DKP.i, 5DKP.j, 5DKP.k, 5DKP.l, 5DKP.m, 5DKP.n explicitly.

These chains are represented by chain 5C90.A which has more than 50% sequence identity.

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Entity #2 | Chains 0,1,2,3,O,P,Q,R,S,T,U,V,W,X,Y,Z,o,p,q,r,s,t,u,v,w,x,y,z

Description: agonist ADEP A54556 protein | Length: 7

This entity is too short to be considered for the all vs. all structure alignments.


References