Structural Similarities for the Entities in PDB 5CDW

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B,C,E,G,H,K,L,O,P,U,V,Y,Z,c,d

Description: Growth factor receptor-bound protein 2 protein | Length: 100

No structure alignment results are available for 5CDW.A, 5CDW.B, 5CDW.C, 5CDW.E, 5CDW.G, 5CDW.H, 5CDW.K, 5CDW.L, 5CDW.O, 5CDW.P, 5CDW.U, 5CDW.V, 5CDW.Y, 5CDW.Z, 5CDW.c, 5CDW.d explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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View how chain 5CDW.d compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains D,F,I,J,M,N,Q,R,T,X,a,b,f,h,j,s

Description: SER-PTR-VAL-ASN-VAL-GLN protein | Length: 6

This entity is too short to be considered for the all vs. all structure alignments.


References