Structural Similarities for the Entities in PDB 4Y8N

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,O

Description: Proteasome subunit alpha type-2 protein | Length: 250

No structure alignment results are available for 4Y8N.A, 4Y8N.O explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #10 | Chains J,X

Description: Proteasome subunit beta type-4 protein | Length: 198

No structure alignment results are available for 4Y8N.J, 4Y8N.X explicitly.

These chains are represented by chain 5LE5.J which has more than 40% sequence identity.

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Entity #11 | Chains K,Y

Description: Proteasome subunit beta type-5 protein | Length: 212

No structure alignment results are available for 4Y8N.K, 4Y8N.Y explicitly.

These chains are represented by chain 5LE5.K which has more than 70% sequence identity.

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Entity #12 | Chains L,Z

Description: Proteasome subunit beta type-6 protein | Length: 222

No structure alignment results are available for 4Y8N.L, 4Y8N.Z explicitly.

These chains are represented by chain 4R17.L which is 100% sequence identical.

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Entity #13 | Chains M,a

Description: Proteasome subunit beta type-7 protein | Length: 239

No structure alignment results are available for 4Y8N.M, 4Y8N.a explicitly.

These chains are represented by chain 4R17.M which is 100% sequence identical.

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Entity #14 | Chains N,b

Description: Proteasome subunit beta type-1 protein | Length: 196

No structure alignment results are available for 4Y8N.N, 4Y8N.b explicitly.

These chains are represented by chain 4R17.N which is 100% sequence identical.

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Entity #15 | Chains c,d

Description: Ac-PAE-ep protein | Length: 5

This entity is too short to be considered for the all vs. all structure alignments.


Entity #2 | Chains B,P

Description: Proteasome subunit alpha type-3 protein | Length: 258

No structure alignment results are available for 4Y8N.B, 4Y8N.P explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains C,Q

Description: Proteasome subunit alpha type-4 protein | Length: 254

No structure alignment results are available for 4Y8N.C, 4Y8N.Q explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #4 | Chains D,R

Description: Proteasome subunit alpha type-5 protein | Length: 260

No structure alignment results are available for 4Y8N.D, 4Y8N.R explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains E,S

Description: Proteasome subunit alpha type-6 protein | Length: 234

No structure alignment results are available for 4Y8N.E, 4Y8N.S explicitly.

These chains are represented by chain 4R17.E which is 100% sequence identical.

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Entity #6 | Chains F,T

Description: Probable proteasome subunit alpha type-7 protein | Length: 288

No structure alignment results are available for 4Y8N.F, 4Y8N.T explicitly.

These chains are represented by chain 4R17.F which is 100% sequence identical.

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Entity #7 | Chains G,U

Description: Proteasome subunit alpha type-1 protein | Length: 252

No structure alignment results are available for 4Y8N.G, 4Y8N.U explicitly.

These chains are represented by chain 5LE5.G which has more than 50% sequence identity.

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Entity #8 | Chains H,V

Description: Proteasome subunit beta type-2 protein | Length: 232

No structure alignment results are available for 4Y8N.H, 4Y8N.V explicitly.

These chains are represented by chain 5LE5.H which has more than 50% sequence identity.

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Entity #9 | Chains I,W

Description: Proteasome subunit beta type-3 protein | Length: 205

No structure alignment results are available for 4Y8N.I, 4Y8N.W explicitly.

These chains are represented by chain 5LE5.I which has more than 50% sequence identity.

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References