Structural Similarities for the Entities in PDB 4XMM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A

Description: Protein transport protein SEC13 protein | Length: 297

No structure alignment results are available for 4XMM.A explicitly.

It is represented by chain 2PM7.B which has more than 95% sequence identity.

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Entity #2 | Chains B

Description: Nucleoporin NUP145 protein | Length: 652

No structure alignment results are available for 4XMM.B explicitly.

It is represented by chain 4XMN.B which is 100% sequence identical.

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Entity #3 | Chains C

Description: Nucleoporin SEH1 protein | Length: 349

No structure alignment results are available for 4XMM.C explicitly.

It is represented by chain 3F3F.A which is 100% sequence identical.

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Entity #4 | Chains D

Description: Nucleoporin NUP85 protein | Length: 715

No structure alignment results are available for 4XMM.D explicitly.

It is represented by chain 4XMN.D which has more than 95% sequence identity.

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Entity #5 | Chains E

Description: Nucleoporin NUP120 protein | Length: 1045

No structure alignment results are available for 4XMM.E explicitly.

It is represented by chain 4XMN.E which has more than 95% sequence identity.

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Entity #6 | Chains F

Description: Nucleoporin NUP84 protein | Length: 454

No structure alignment results are available for 4XMM.F explicitly.

It is represented by chain 3IKO.C which is 100% sequence identical.

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Entity #7 | Chains H

Description: Antibody 57 heavy chain protein | Length: 271

No structure alignment results are available for 4XMM.H explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #8 | Chains L

Description: Antibody 57 light chain protein | Length: 217

No structure alignment results are available for 4XMM.L explicitly.

It is represented by chain 4NZU.L which has more than 90% sequence identity.

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References