Structural Similarities for the Entities in PDB 4WU9

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,E

Description: Histone H3.2 protein | Length: 135

No structure alignment results are available for 4WU9.A, 4WU9.E explicitly.

These chains are represented by chain 1TZY.c which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 4WU9.E compares with the representative chain d1tzyc_. Select a comparison method:


Entity #2 | Chains B,F

Description: Histone H4 protein | Length: 102

No structure alignment results are available for 4WU9.B, 4WU9.F explicitly.

These chains are represented by chain 1TZY.d which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4WU9.F compares with the representative chain d1tzyd_. Select a comparison method:


Entity #3 | Chains C,G

Description: Histone H2A type 1 protein | Length: 129

No structure alignment results are available for 4WU9.C, 4WU9.G explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 4WU9.G compares with the representative chain xxxx. Select a comparison method:


Entity #4 | Chains D,H

Description: Histone H2B 1.1 protein | Length: 125

No structure alignment results are available for 4WU9.D, 4WU9.H explicitly.

These chains are represented by chain 1TZY.b which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 4WU9.H compares with the representative chain d1tzyb_. Select a comparison method:


Entity #5 | Chains I

Description: DNA (145-MER) dna | Length: 145

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains J

Description: DNA (145-MER) dna | Length: 145

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References