Structural Similarities for the Entities in PDB 4WJ3

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,D,G,J

Description: Glutamyl-tRNA(Gln) amidotransferase subunit A protein | Length: 484

No structure alignment results are available for 4WJ3.A, 4WJ3.D, 4WJ3.G, 4WJ3.J explicitly.

These chains are represented by chain 2GI3.a which has more than 40% sequence identity.

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Entity #2 | Chains B,E,H,K

Description: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B protein | Length: 481

No structure alignment results are available for 4WJ3.B, 4WJ3.E, 4WJ3.H, 4WJ3.K explicitly.

These chains are represented by chain 3KFU.F which has more than 50% sequence identity.

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Entity #3 | Chains C,F,I,L

Description: Glutamyl-tRNA(Gln) amidotransferase subunit C protein | Length: 104

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Entity #4 | Chains M,N,O,P

Description: Aspartate--tRNA(Asp/Asn) ligase protein | Length: 599

No structure alignment results are available for 4WJ3.M, 4WJ3.N, 4WJ3.O, 4WJ3.P explicitly.

These chains are represented by chain 1L0W.a which has more than 50% sequence identity.

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Entity #5 | Chains Q,R,S,T

Description: 76mer-tRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References