Structural Similarities for the Entities in PDB 4V98

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains AA,AI,AQ,AY,Ag,Ao,Aw,BA,BI,BQ,BY,Bg,Bo,Bw,CA,CI,CQ,CY,Cg,Co

Description: Small nuclear ribonucleoprotein Sm D1 protein | Length: 119

No structure alignment results are available for 4V98.AA, 4V98.AI, 4V98.AQ, 4V98.AY, 4V98.Ag, 4V98.Ao, 4V98.Aw, 4V98.BA, 4V98.BI, 4V98.BQ, 4V98.BY, 4V98.Bg, 4V98.Bo, 4V98.Bw, 4V98.CA, 4V98.CI, 4V98.CQ, 4V98.CY, 4V98.Cg, 4V98.Co explicitly.

These chains are represented by chain 4F7U.A which is 100% sequence identical.

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Entity #2 | Chains AB,AJ,AR,AZ,Ah,Ap,Ax,BB,BJ,BR,BZ,Bh,Bp,Bx,CB,CJ,CR,CZ,Ch,Cp

Description: Small nuclear ribonucleoprotein Sm D2 protein | Length: 118

No structure alignment results are available for 4V98.AB, 4V98.AJ, 4V98.AR, 4V98.AZ, 4V98.Ah, 4V98.Ap, 4V98.Ax, 4V98.BB, 4V98.BJ, 4V98.BR, 4V98.BZ, 4V98.Bh, 4V98.Bp, 4V98.Bx, 4V98.CB, 4V98.CJ, 4V98.CR, 4V98.CZ, 4V98.Ch, 4V98.Cp explicitly.

These chains are represented by chain 4F7U.B which is 100% sequence identical.

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Entity #3 | Chains AC,AK,AS,Aa,Ai,Aq,Ay,BC,BK,BS,Ba,Bi,Bq,By,CC,CK,CS,Ca,Ci,Cq

Description: Small nuclear ribonucleoprotein E protein | Length: 92

No structure alignment results are available for 4V98.AC, 4V98.AK, 4V98.AS, 4V98.Aa, 4V98.Ai, 4V98.Aq, 4V98.Ay, 4V98.BC, 4V98.BK, 4V98.BS, 4V98.Ba, 4V98.Bi, 4V98.Bq, 4V98.By, 4V98.CC, 4V98.CK, 4V98.CS, 4V98.Ca, 4V98.Ci, 4V98.Cq explicitly.

These chains are represented by chain 4F7U.E which is 100% sequence identical.

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Entity #4 | Chains AD,AL,AT,Ab,Aj,Ar,Az,BD,BL,BT,Bb,Bj,Br,Bz,CD,CL,CT,Cb,Cj,Cr

Description: Small nuclear ribonucleoprotein F protein | Length: 86

No structure alignment results are available for 4V98.AD, 4V98.AL, 4V98.AT, 4V98.Ab, 4V98.Aj, 4V98.Ar, 4V98.Az, 4V98.BD, 4V98.BL, 4V98.BT, 4V98.Bb, 4V98.Bj, 4V98.Br, 4V98.Bz, 4V98.CD, 4V98.CL, 4V98.CT, 4V98.Cb, 4V98.Cj, 4V98.Cr explicitly.

These chains are represented by chain 4F7U.F which is 100% sequence identical.

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View how chain 4V98.Cr compares with the representative chain PDP:4F7UFa. Select a comparison method:


Entity #5 | Chains A1,AE,AM,AU,Ac,Ak,As,B1,BE,BM,BU,Bc,Bk,Bs,CE,CM,CU,Cc,Ck,Cs

Description: LD23602p protein | Length: 124

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Entity #6 | Chains A2,AF,AN,AV,Ad,Al,At,B2,BF,BN,BV,Bd,Bl,Bt,CF,CN,CV,Cd,Cl,Ct

Description: CG10419 protein | Length: 247

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Entity #7 | Chains A3,AG,AO,AW,Ae,Am,Au,B3,BG,BO,BW,Be,Bm,Bu,CG,CO,CW,Ce,Cm,Cu

Description: Icln protein | Length: 186

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Entity #8 | Chains A4,AH,AP,AX,Af,An,Av,B4,BH,BP,BX,Bf,Bn,Bv,CH,CP,CX,Cf,Cn,Cv

Description: Small nuclear ribonucleoprotein G protein | Length: 76

No structure alignment results are available for 4V98.A4, 4V98.AH, 4V98.AP, 4V98.AX, 4V98.Af, 4V98.An, 4V98.Av, 4V98.B4, 4V98.BH, 4V98.BP, 4V98.BX, 4V98.Bf, 4V98.Bn, 4V98.Bv, 4V98.CH, 4V98.CP, 4V98.CX, 4V98.Cf, 4V98.Cn, 4V98.Cv explicitly.

These chains are represented by chain 4F7U.G which is 100% sequence identical.

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References