Structural Similarities for the Entities in PDB 4V7V

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains AA

Description: 16S rRNA rna | Length: 1533

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains AJ,CJ

Description: 30S ribosomal protein S10 protein | Length: 98

No structure alignment results are available for 4V7V.AJ, 4V7V.CJ explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains AK,CK

Description: 30S ribosomal protein S11 protein | Length: 117

No structure alignment results are available for 4V7V.AK, 4V7V.CK explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains AL,CL

Description: 30S ribosomal protein S12 protein | Length: 123

No structure alignment results are available for 4V7V.AL, 4V7V.CL explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #13 | Chains AM

Description: 30S ribosomal protein S13 protein | Length: 114

No structure alignment results are available for 4V7V.AM explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains AN,CN

Description: 30S ribosomal protein S14 protein | Length: 100

No structure alignment results are available for 4V7V.AN, 4V7V.CN explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains AO,CO

Description: 30S ribosomal protein S15 protein | Length: 88

No structure alignment results are available for 4V7V.AO, 4V7V.CO explicitly.

These chains are represented by chain 4A5U.B which is 100% sequence identical.

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Entity #16 | Chains AP

Description: 30S ribosomal protein S16 protein | Length: 82

No structure alignment results are available for 4V7V.AP explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains AQ,CQ

Description: 30S ribosomal protein S17 protein | Length: 80

No structure alignment results are available for 4V7V.AQ, 4V7V.CQ explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains AR,CR

Description: 30S ribosomal protein S18 protein | Length: 55

No structure alignment results are available for 4V7V.AR, 4V7V.CR explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains AS,CS

Description: 30S ribosomal protein S19 protein | Length: 79

No structure alignment results are available for 4V7V.AS, 4V7V.CS explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains AB,CB

Description: 30S ribosomal protein S2 protein | Length: 218

No structure alignment results are available for 4V7V.AB, 4V7V.CB explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #20 | Chains AT,CT

Description: 30S ribosomal protein S20 protein | Length: 85

No structure alignment results are available for 4V7V.AT, 4V7V.CT explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains AU,CU

Description: 30S ribosomal protein S21 protein | Length: 51

No structure alignment results are available for 4V7V.AU, 4V7V.CU explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains BA,DA

Description: 23S rRNA rna | Length: 2903

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #23 | Chains BB

Description: 5S rRNA rna | Length: 118

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #24 | Chains BC,DC

Description: 50S ribosomal protein L2 protein | Length: 271

No structure alignment results are available for 4V7V.BC, 4V7V.DC explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains BD,DD

Description: 50S ribosomal protein L3 protein | Length: 209

No structure alignment results are available for 4V7V.BD, 4V7V.DD explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #26 | Chains BE,DE

Description: 50S ribosomal protein L4 protein | Length: 201

No structure alignment results are available for 4V7V.BE, 4V7V.DE explicitly.

These chains are represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #27 | Chains BF

Description: 50S ribosomal protein L5 protein | Length: 177

No structure alignment results are available for 4V7V.BF explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #28 | Chains BG,DG

Description: 50S ribosomal protein L6 protein | Length: 176

No structure alignment results are available for 4V7V.BG, 4V7V.DG explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains BH,DH

Description: 50S ribosomal protein L9 protein | Length: 149

No structure alignment results are available for 4V7V.BH, 4V7V.DH explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains AC,CC

Description: 30S ribosomal protein S3 protein | Length: 206

No structure alignment results are available for 4V7V.AC, 4V7V.CC explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains BI,DI

Description: 50S ribosomal protein L11 protein | Length: 141

No structure alignment results are available for 4V7V.BI, 4V7V.DI explicitly.

These chains are represented by chain 3EGV.b which has more than 50% sequence identity.

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Entity #31 | Chains BJ,DJ

Description: 50S ribosomal protein L13 protein | Length: 142

No structure alignment results are available for 4V7V.BJ, 4V7V.DJ explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains BK,DK

Description: 50S ribosomal protein L14 protein | Length: 122

No structure alignment results are available for 4V7V.BK, 4V7V.DK explicitly.

These chains are represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #33 | Chains BL,DL

Description: 50S ribosomal protein L15 protein | Length: 143

No structure alignment results are available for 4V7V.BL, 4V7V.DL explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #34 | Chains BM,DM

Description: 50S ribosomal protein L16 protein | Length: 136

No structure alignment results are available for 4V7V.BM, 4V7V.DM explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #35 | Chains BN,DN

Description: 50S ribosomal protein L17 protein | Length: 120

No structure alignment results are available for 4V7V.BN, 4V7V.DN explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #36 | Chains BO,DO

Description: 50S ribosomal protein L18 protein | Length: 116

No structure alignment results are available for 4V7V.BO, 4V7V.DO explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains BP,DP

Description: 50S ribosomal protein L19 protein | Length: 114

No structure alignment results are available for 4V7V.BP, 4V7V.DP explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #38 | Chains BQ,DQ

Description: 50S ribosomal protein L20 protein | Length: 117

No structure alignment results are available for 4V7V.BQ, 4V7V.DQ explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #39 | Chains BR,DR

Description: 50S ribosomal protein L21 protein | Length: 103

No structure alignment results are available for 4V7V.BR, 4V7V.DR explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains AD,CD

Description: 30S ribosomal protein S4 protein | Length: 205

No structure alignment results are available for 4V7V.AD, 4V7V.CD explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #40 | Chains BS,DS

Description: 50S ribosomal protein L22 protein | Length: 110

No structure alignment results are available for 4V7V.BS, 4V7V.DS explicitly.

These chains are represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #41 | Chains BT,DT

Description: 50S ribosomal protein L23 protein | Length: 93

No structure alignment results are available for 4V7V.BT, 4V7V.DT explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #42 | Chains BU,DU

Description: 50S ribosomal protein L24 protein | Length: 102

No structure alignment results are available for 4V7V.BU, 4V7V.DU explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains BV,DV

Description: 50S ribosomal protein L25 protein | Length: 94

No structure alignment results are available for 4V7V.BV, 4V7V.DV explicitly.

These chains are represented by chain 1DFU.p which is 100% sequence identical.

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Entity #44 | Chains BW,DW

Description: 50S ribosomal protein L27 protein | Length: 79

No structure alignment results are available for 4V7V.BW, 4V7V.DW explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #45 | Chains BX,DX

Description: 50S ribosomal protein L28 protein | Length: 77

No structure alignment results are available for 4V7V.BX, 4V7V.DX explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #46 | Chains BY,DY

Description: 50S ribosomal protein L29 protein | Length: 63

No structure alignment results are available for 4V7V.BY, 4V7V.DY explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #47 | Chains BZ,DZ

Description: 50S ribosomal protein L30 protein | Length: 58

No structure alignment results are available for 4V7V.BZ, 4V7V.DZ explicitly.

These chains are represented by chain 1BXY.a which has more than 40% sequence identity.

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Entity #48 | Chains B0,D0

Description: 50S ribosomal protein L32 protein | Length: 56

No structure alignment results are available for 4V7V.B0, 4V7V.D0 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #49 | Chains B1,D1

Description: 50S ribosomal protein L33 protein | Length: 50

No structure alignment results are available for 4V7V.B1, 4V7V.D1 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains AE,CE

Description: 30S ribosomal protein S5 protein | Length: 150

No structure alignment results are available for 4V7V.AE, 4V7V.CE explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #50 | Chains B2,D2

Description: 50S ribosomal protein L34 protein | Length: 46

No structure alignment results are available for 4V7V.B2, 4V7V.D2 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #51 | Chains B3,D3

Description: 50S ribosomal protein L35 protein | Length: 64

No structure alignment results are available for 4V7V.B3, 4V7V.D3 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #52 | Chains B4,D4

Description: 50S ribosomal protein L36 protein | Length: 38

No structure alignment results are available for 4V7V.B4, 4V7V.D4 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #53 | Chains CA

Description: 16S rRNA rna | Length: 1530

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #54 | Chains CG

Description: 30S ribosomal protein S7 protein | Length: 150

No structure alignment results are available for 4V7V.CG explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #55 | Chains CM

Description: 30S ribosomal protein S13 protein | Length: 113

No structure alignment results are available for 4V7V.CM explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #56 | Chains CP

Description: 30S ribosomal protein S16 protein | Length: 80

No structure alignment results are available for 4V7V.CP explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #57 | Chains DB

Description: 5S rRNA rna | Length: 117

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #58 | Chains DF

Description: 50S ribosomal protein L5 protein | Length: 178

No structure alignment results are available for 4V7V.DF explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #6 | Chains AF,CF

Description: 30S ribosomal protein S6 protein | Length: 100

No structure alignment results are available for 4V7V.AF, 4V7V.CF explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains AG

Description: 30S ribosomal protein S7 protein | Length: 151

No structure alignment results are available for 4V7V.AG explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains AH,CH

Description: 30S ribosomal protein S8 protein | Length: 129

No structure alignment results are available for 4V7V.AH, 4V7V.CH explicitly.

These chains are represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #9 | Chains AI,CI

Description: 30S ribosomal protein S9 protein | Length: 127

No structure alignment results are available for 4V7V.AI, 4V7V.CI explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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References