4V6M

Structure of the ribosome-SecYE complex in the membrane environment


Structural Similarities for the Entities in PDB 4V6M

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains AA

Description: 16S RIBOSOMAL RNA rna | Length: 1542

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains AF

Description: 30S ribosomal protein S6 protein | Length: 135

No structure alignment results are available for 4V6M.AF explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains AG

Description: 30S ribosomal protein S7 protein | Length: 178

No structure alignment results are available for 4V6M.AG explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains AH

Description: 30S ribosomal protein S8 protein | Length: 129

No structure alignment results are available for 4V6M.AH explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #13 | Chains AI

Description: 30S ribosomal protein S9 protein | Length: 129

No structure alignment results are available for 4V6M.AI explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains AJ

Description: 30S ribosomal protein S10 protein | Length: 103

No structure alignment results are available for 4V6M.AJ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains AK

Description: 30S ribosomal protein S11 protein | Length: 128

No structure alignment results are available for 4V6M.AK explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains AL

Description: 30S ribosomal protein S12 protein | Length: 123

No structure alignment results are available for 4V6M.AL explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #17 | Chains AM

Description: 30S ribosomal protein S13 protein | Length: 117

No structure alignment results are available for 4V6M.AM explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains AN

Description: 30S ribosomal protein S14 protein | Length: 100

No structure alignment results are available for 4V6M.AN explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains AO

Description: 30S ribosomal protein S15 protein | Length: 88

No structure alignment results are available for 4V6M.AO explicitly.

It is represented by chain 4A5U.B which has more than 95% sequence identity.

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Entity #2 | Chains AX

Description: mRNA rna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains AP

Description: 30S ribosomal protein S16 protein | Length: 82

No structure alignment results are available for 4V6M.AP explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains AQ

Description: 30S ribosomal protein S17 protein | Length: 83

No structure alignment results are available for 4V6M.AQ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains AR

Description: 30S ribosomal protein S18 protein | Length: 74

No structure alignment results are available for 4V6M.AR explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains AS

Description: 30S ribosomal protein S19 protein | Length: 91

No structure alignment results are available for 4V6M.AS explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains AT

Description: 30S ribosomal protein S20 protein | Length: 86

No structure alignment results are available for 4V6M.AT explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains AU

Description: 30S ribosomal protein S21 protein | Length: 70

No structure alignment results are available for 4V6M.AU explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #26 | Chains B7

Description: 5S RIBOSOMAL RNA rna | Length: 120

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #27 | Chains B8

Description: 23S RIBOSOMAL RNA rna | Length: 2904

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #28 | Chains BA

Description: Preprotein translocase secY subunit protein | Length: 435

No structure alignment results are available for 4V6M.BA explicitly.

It is represented by chain 5AWW.Y which has more than 40% sequence identity.

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Entity #29 | Chains BB

Description: Preprotein translocase secE subunit protein | Length: 116

No structure alignment results are available for 4V6M.BB explicitly.

It is represented by chain 5MG3.E which has more than 95% sequence identity.

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Entity #3 | Chains AV

Description: FtsQ nascent chain rna | Length: 77

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains B5

Description: 50S ribosomal protein L1 protein | Length: 234

No structure alignment results are available for 4V6M.B5 explicitly.

It is represented by chain 4REO.A which has more than 50% sequence identity.

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Entity #31 | Chains B6

Description: 50S ribosomal protein L2 protein | Length: 272

No structure alignment results are available for 4V6M.B6 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains BD

Description: 50S ribosomal protein L3 protein | Length: 209

No structure alignment results are available for 4V6M.BD explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains BE

Description: 50S ribosomal protein L4 protein | Length: 201

No structure alignment results are available for 4V6M.BE explicitly.

It is represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #34 | Chains BF

Description: 50S ribosomal protein L5 protein | Length: 178

No structure alignment results are available for 4V6M.BF explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #35 | Chains BG

Description: 50S ribosomal protein L6 protein | Length: 176

No structure alignment results are available for 4V6M.BG explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #36 | Chains BH

Description: 50S ribosomal protein L9 protein | Length: 149

No structure alignment results are available for 4V6M.BH explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains BI

Description: 50S ribosomal protein L11 protein | Length: 141

No structure alignment results are available for 4V6M.BI explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

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Entity #38 | Chains BJ

Description: 50S ribosomal protein L13 protein | Length: 142

No structure alignment results are available for 4V6M.BJ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #39 | Chains BK

Description: 50S ribosomal protein L14 protein | Length: 123

No structure alignment results are available for 4V6M.BK explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #4 | Chains AZ

Description: Cell division protein FtsQ protein | Length: 98

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Entity #40 | Chains BL

Description: 50S ribosomal protein L15 protein | Length: 144

No structure alignment results are available for 4V6M.BL explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #41 | Chains BM

Description: 50S ribosomal protein L16 protein | Length: 136

No structure alignment results are available for 4V6M.BM explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #42 | Chains BN

Description: 50S ribosomal protein L17 protein | Length: 127

No structure alignment results are available for 4V6M.BN explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains BO

Description: 50S ribosomal protein L18 protein | Length: 117

No structure alignment results are available for 4V6M.BO explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #44 | Chains BP

Description: 50S ribosomal protein L19 protein | Length: 114

No structure alignment results are available for 4V6M.BP explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #45 | Chains BQ

Description: 50S ribosomal protein L20 protein | Length: 117

No structure alignment results are available for 4V6M.BQ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #46 | Chains BR

Description: 50S ribosomal protein L21 protein | Length: 103

No structure alignment results are available for 4V6M.BR explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #47 | Chains BS

Description: 50S ribosomal protein L22 protein | Length: 110

No structure alignment results are available for 4V6M.BS explicitly.

It is represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #48 | Chains BT

Description: 50S ribosomal protein L23 protein | Length: 100

No structure alignment results are available for 4V6M.BT explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #49 | Chains BU

Description: 50S ribosomal protein L24 protein | Length: 103

No structure alignment results are available for 4V6M.BU explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains A0,A1

Description: Apolipoprotein A-I protein | Length: 200

No structure alignment results are available for 4V6M.A0, 4V6M.A1 explicitly.

These chains are represented by chain 1AV1.a which is 100% sequence identical.

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Entity #50 | Chains BV

Description: 50S ribosomal protein L25 protein | Length: 94

No structure alignment results are available for 4V6M.BV explicitly.

It is represented by chain 1DFU.p which is 100% sequence identical.

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Entity #51 | Chains BW

Description: 50S ribosomal protein L27 protein | Length: 84

No structure alignment results are available for 4V6M.BW explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #52 | Chains BX

Description: 50S ribosomal protein L28 protein | Length: 77

No structure alignment results are available for 4V6M.BX explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #53 | Chains BY

Description: 50S ribosomal protein L29 protein | Length: 63

No structure alignment results are available for 4V6M.BY explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #54 | Chains BZ

Description: 50S ribosomal protein L30 protein | Length: 58

No structure alignment results are available for 4V6M.BZ explicitly.

It is represented by chain 1BXY.a which has more than 40% sequence identity.

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Entity #55 | Chains B0

Description: 50S ribosomal protein L32 protein | Length: 56

No structure alignment results are available for 4V6M.B0 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #56 | Chains B1

Description: 50S ribosomal protein L33 protein | Length: 54

No structure alignment results are available for 4V6M.B1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #57 | Chains B2

Description: 50S ribosomal protein L34 protein | Length: 46

No structure alignment results are available for 4V6M.B2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #58 | Chains B3

Description: 50S ribosomal protein L35 protein | Length: 64

No structure alignment results are available for 4V6M.B3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #59 | Chains B4

Description: 50S ribosomal protein L36 protein | Length: 38

No structure alignment results are available for 4V6M.B4 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains AB

Description: 30S ribosomal protein S2 protein | Length: 240

No structure alignment results are available for 4V6M.AB explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains AC

Description: 30S ribosomal protein S3 protein | Length: 232

No structure alignment results are available for 4V6M.AC explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains AD

Description: 30S ribosomal protein S4 protein | Length: 205

No structure alignment results are available for 4V6M.AD explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains AE

Description: 30S ribosomal protein S5 protein | Length: 166

No structure alignment results are available for 4V6M.AE explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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References