Structural Similarities for the Entities in PDB 4V6F

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains AA

Description: 23S RIBOSOMAL RNA rna | Length: 2909

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains AN,DN

Description: 50S RIBOSOMAL PROTEIN L14 protein | Length: 122

No structure alignment results are available for 4V6F.AN, 4V6F.DN explicitly.

These chains are represented by chain 1WHI.a which has more than 70% sequence identity.

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Entity #11 | Chains AO,DO

Description: 50S RIBOSOMAL PROTEIN L15 protein | Length: 150

No structure alignment results are available for 4V6F.AO, 4V6F.DO explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #12 | Chains AP,DP

Description: 50S RIBOSOMAL PROTEIN L16 protein | Length: 141

No structure alignment results are available for 4V6F.AP, 4V6F.DP explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #13 | Chains A0,D0

Description: 50S RIBOSOMAL PROTEIN L17 protein | Length: 118

No structure alignment results are available for 4V6F.A0, 4V6F.D0 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains AQ,DQ

Description: 50S RIBOSOMAL PROTEIN L18 protein | Length: 112

No structure alignment results are available for 4V6F.AQ, 4V6F.DQ explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #15 | Chains AR,DR

Description: 50S RIBOSOMAL PROTEIN L19 protein | Length: 146

No structure alignment results are available for 4V6F.AR, 4V6F.DR explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains A1,D1

Description: 50S RIBOSOMAL PROTEIN L20 protein | Length: 118

No structure alignment results are available for 4V6F.A1, 4V6F.D1 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #17 | Chains A2,D2

Description: 50S RIBOSOMAL PROTEIN L21 protein | Length: 101

No structure alignment results are available for 4V6F.A2, 4V6F.D2 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #18 | Chains AS,DS

Description: 50S RIBOSOMAL PROTEIN L22 protein | Length: 113

No structure alignment results are available for 4V6F.AS, 4V6F.DS explicitly.

These chains are represented by chain 1I4J.a which has more than 95% sequence identity.

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Entity #19 | Chains AT,DT

Description: 50S RIBOSOMAL PROTEIN L23 protein | Length: 96

No structure alignment results are available for 4V6F.AT, 4V6F.DT explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains AB,DB

Description: 5S RIBOSOMAL RNA rna | Length: 122

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains AU,DU

Description: 50S RIBOSOMAL PROTEIN L24 protein | Length: 110

No structure alignment results are available for 4V6F.AU, 4V6F.DU explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #21 | Chains AV,DV

Description: 50S RIBOSOMAL PROTEIN L25 protein | Length: 206

No structure alignment results are available for 4V6F.AV, 4V6F.DV explicitly.

These chains are represented by chain 1FEU.a which has more than 95% sequence identity.

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Entity #22 | Chains A3,D3

Description: 50S RIBOSOMAL PROTEIN L27 protein | Length: 85

No structure alignment results are available for 4V6F.A3, 4V6F.D3 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #23 | Chains AZ,DZ

Description: 50S RIBOSOMAL PROTEIN L28 protein | Length: 98

No structure alignment results are available for 4V6F.AZ, 4V6F.DZ explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains AW,DW

Description: 50S RIBOSOMAL PROTEIN L29 protein | Length: 72

No structure alignment results are available for 4V6F.AW, 4V6F.DW explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #25 | Chains AX,DX

Description: 50S RIBOSOMAL PROTEIN L30 protein | Length: 60

No structure alignment results are available for 4V6F.AX, 4V6F.DX explicitly.

These chains are represented by chain 1BXY.a which is 100% sequence identical.

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Entity #26 | Chains A4,D4

Description: 50S RIBOSOMAL PROTEIN L31 protein | Length: 71

No structure alignment results are available for 4V6F.A4, 4V6F.D4 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains A5,D5

Description: 50S RIBOSOMAL PROTEIN L32 protein | Length: 60

No structure alignment results are available for 4V6F.A5, 4V6F.D5 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #28 | Chains A6,D6

Description: 50S RIBOSOMAL PROTEIN L33 protein | Length: 54

No structure alignment results are available for 4V6F.A6, 4V6F.D6 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #29 | Chains A7,D7

Description: 50S RIBOSOMAL PROTEIN L34 protein | Length: 49

No structure alignment results are available for 4V6F.A7, 4V6F.D7 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains AD,DD

Description: 50S RIBOSOMAL PROTEIN L2 protein | Length: 276

No structure alignment results are available for 4V6F.AD, 4V6F.DD explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #30 | Chains A8,D8

Description: 50S RIBOSOMAL PROTEIN L35 protein | Length: 65

No structure alignment results are available for 4V6F.A8, 4V6F.D8 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #31 | Chains BA

Description: 16S ribosomal RNA rna | Length: 1516

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #32 | Chains BE,CE

Description: 30S ribosomal protein S2 protein | Length: 256

No structure alignment results are available for 4V6F.BE, 4V6F.CE explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #33 | Chains BF,CF

Description: 30S ribosomal protein S3 protein | Length: 239

No structure alignment results are available for 4V6F.BF, 4V6F.CF explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #34 | Chains BG,CG

Description: 30S ribosomal protein S4 protein | Length: 209

No structure alignment results are available for 4V6F.BG, 4V6F.CG explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #35 | Chains BH,CH

Description: 30S ribosomal protein S5 protein | Length: 162

No structure alignment results are available for 4V6F.BH, 4V6F.CH explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #36 | Chains BI,CI

Description: 30S ribosomal protein S6 protein | Length: 101

No structure alignment results are available for 4V6F.BI, 4V6F.CI explicitly.

These chains are represented by chain 1CQM.a which has more than 95% sequence identity.

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Entity #37 | Chains BJ,CJ

Description: 30S ribosomal protein S7 protein | Length: 156

No structure alignment results are available for 4V6F.BJ, 4V6F.CJ explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #38 | Chains BK,CK

Description: 30S ribosomal protein S8 protein | Length: 138

No structure alignment results are available for 4V6F.BK, 4V6F.CK explicitly.

These chains are represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #39 | Chains BL,CL

Description: 30S ribosomal protein S9 protein | Length: 128

No structure alignment results are available for 4V6F.BL, 4V6F.CL explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #4 | Chains AE,DE

Description: 50S RIBOSOMAL PROTEIN L3 protein | Length: 206

No structure alignment results are available for 4V6F.AE, 4V6F.DE explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #40 | Chains BM,CM

Description: 30S ribosomal protein S10 protein | Length: 105

No structure alignment results are available for 4V6F.BM, 4V6F.CM explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #41 | Chains BN,CN

Description: 30S ribosomal protein S11 protein | Length: 129

No structure alignment results are available for 4V6F.BN, 4V6F.CN explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #42 | Chains BO,CO

Description: 30S ribosomal protein S12 protein | Length: 132

No structure alignment results are available for 4V6F.BO, 4V6F.CO explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #43 | Chains BP,CP

Description: 30S ribosomal protein S13 protein | Length: 126

No structure alignment results are available for 4V6F.BP, 4V6F.CP explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains BQ,CQ

Description: 30S ribosomal protein S14 type Z protein | Length: 61

No structure alignment results are available for 4V6F.BQ, 4V6F.CQ explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #45 | Chains BR,CR

Description: 30S ribosomal protein S15 protein | Length: 89

No structure alignment results are available for 4V6F.BR, 4V6F.CR explicitly.

These chains are represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #46 | Chains BS,CS

Description: 30S ribosomal protein S16 protein | Length: 88

No structure alignment results are available for 4V6F.BS, 4V6F.CS explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #47 | Chains BT,CT

Description: 30S ribosomal protein S17 protein | Length: 105

No structure alignment results are available for 4V6F.BT, 4V6F.CT explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #48 | Chains BU,CU

Description: 30S ribosomal protein S18 protein | Length: 88

No structure alignment results are available for 4V6F.BU, 4V6F.CU explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #49 | Chains BV,CV

Description: 30S ribosomal protein S19 protein | Length: 93

No structure alignment results are available for 4V6F.BV, 4V6F.CV explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains AF,DF

Description: 50S RIBOSOMAL PROTEIN L4 protein | Length: 210

No structure alignment results are available for 4V6F.AF, 4V6F.DF explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #50 | Chains BW,CW

Description: 30S ribosomal protein S20 protein | Length: 106

No structure alignment results are available for 4V6F.BW, 4V6F.CW explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #51 | Chains BX,CX

Description: 30S ribosomal protein Thx protein | Length: 27

No structure alignment results are available for 4V6F.BX, 4V6F.CX explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #52 | Chains BB,BC,BD,CB,CC,CD

Description: TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #53 | Chains B1,C1

Description: MRNA rna | Length: 30

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #54 | Chains CA

Description: 16S ribosomal RNA rna | Length: 1515

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #55 | Chains DA

Description: 23S RRNA rna | Length: 2912

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #56 | Chains DI,DJ

Description: 50S ribosomal protein L7/L12 protein | Length: 125

No structure alignment results are available for 4V6F.DI, 4V6F.DJ explicitly.

These chains are represented by chain 1DD3.a which has more than 50% sequence identity.

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Entity #57 | Chains DY

Description: 50S ribosomal protein L10 protein | Length: 173

No structure alignment results are available for 4V6F.DY explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #58 | Chains DL

Description: 50S ribosomal protein L11 protein | Length: 147

No structure alignment results are available for 4V6F.DL explicitly.

It is represented by chain 3EGV.b which has more than 95% sequence identity.

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Entity #6 | Chains AG,DG

Description: 50S RIBOSOMAL PROTEIN L5 protein | Length: 182

No structure alignment results are available for 4V6F.AG, 4V6F.DG explicitly.

These chains are represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #7 | Chains AH,DH

Description: 50S RIBOSOMAL PROTEIN L6 protein | Length: 180

No structure alignment results are available for 4V6F.AH, 4V6F.DH explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #8 | Chains AK,DK

Description: 50S RIBOSOMAL PROTEIN L9 protein | Length: 148

No structure alignment results are available for 4V6F.AK, 4V6F.DK explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #9 | Chains AM,DM

Description: 50S RIBOSOMAL PROTEIN L13 protein | Length: 140

No structure alignment results are available for 4V6F.AM, 4V6F.DM explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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References