Structural Similarities for the Entities in PDB 4V0U

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C,L,M

Description: ACTIN, ALPHA SKELETAL MUSCLE protein | Length: 375

No structure alignment results are available for 4V0U.A, 4V0U.B, 4V0U.C, 4V0U.L, 4V0U.M explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #2 | Chains D,F,H,J,N

Description: SERINE/THREONINE-PROTEIN PHOSPHATASE PP1-GAMMA CATALYTIC SUBUNIT protein | Length: 323

No structure alignment results are available for 4V0U.D, 4V0U.F, 4V0U.H, 4V0U.J, 4V0U.N explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains E,G,I,K,O

Description: PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 15B protein | Length: 84

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References