Structural Similarities for the Entities in PDB 4UF6

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,D,G,J

Description: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 protein | Length: 331

No structure alignment results are available for 4UF6.A, 4UF6.D, 4UF6.G, 4UF6.J explicitly.

These chains are represented by chain 4WLR.A which has more than 95% sequence identity.

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View how chain 4UF6.J compares with the representative chain PDP:4WLRAa. Select a comparison method:


Entity #2 | Chains B,E,H,K

Description: POLYUBIQUITIN-B protein | Length: 76

No structure alignment results are available for 4UF6.B, 4UF6.E, 4UF6.H, 4UF6.K explicitly.

These chains are represented by chain 5TOG.A which has more than 70% sequence identity.

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View how chain 4UF6.K compares with the representative chain PDP:5TOGAa. Select a comparison method:


Entity #3 | Chains C,F,I,L

Description: NUCLEAR FACTOR RELATED TO KAPPA-B-BINDING PROTEIN protein | Length: 65

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References