4TVP

Crystal Structure of the HIV-1 BG505 SOSIP.664 Env Trimer Ectodomain, Comprising Atomic-Level Definition of Pre-Fusion gp120 and gp41, in Complex with Human Antibodies PGT122 and 35O22


Structural Similarities for the Entities in PDB 4TVP

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains G

Description: Envelope glycoprotein gp160 protein | Length: 481

No structure alignment results are available for 4TVP.G explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #2 | Chains B

Description: Envelope glycoprotein gp160 protein | Length: 153

No structure alignment results are available for 4TVP.B explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains L

Description: PGT122 Light chain protein | Length: 213

No structure alignment results are available for 4TVP.L explicitly.

It is represented by chain 4NZU.L which has more than 50% sequence identity.

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Entity #4 | Chains H

Description: PGT122 Heavy chain protein | Length: 235

No structure alignment results are available for 4TVP.H explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains D

Description: 35O22 Heavy chain protein | Length: 243

No structure alignment results are available for 4TVP.D explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #6 | Chains E

Description: 35O22 Light chain protein | Length: 216

No structure alignment results are available for 4TVP.E explicitly.

It is represented by chain 4NZU.L which has more than 50% sequence identity.

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References