Structural Similarities for the Entities in PDB 4OZH

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C

Description: HLA class II histocompatibility antigen, DQ alpha 1 chain protein | Length: 191

No structure alignment results are available for 4OZH.A, 4OZH.C explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains B,D

Description: HLA class II histocompatibility antigen, DQ beta 1 chain protein | Length: 213

No structure alignment results are available for 4OZH.B, 4OZH.D explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains E,G

Description: T-cell receptor, s16, alpha chain protein | Length: 203

No structure alignment results are available for 4OZH.E, 4OZH.G explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #4 | Chains F,H

Description: T-cell receptor, s16, beta chain protein | Length: 241

No structure alignment results are available for 4OZH.F, 4OZH.H explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains I,J

Description: Gliadin-alpha2 peptide protein | Length: 13

This entity is too short to be considered for the all vs. all structure alignments.


References