Structural Similarities for the Entities in PDB 4MKV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C,D

Description: Ribulose bisphosphate carboxylase large chain protein | Length: 458

No structure alignment results are available for 4MKV.A, 4MKV.B, 4MKV.C, 4MKV.D explicitly.

These chains are represented by chain 1WDD.a which has more than 90% sequence identity.

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View how chain 4MKV.D compares with the representative chain d1wdda1. Select a comparison method:


Entity #2 | Chains S,T,U,V

Description: Ribulose bisphosphate carboxylase small chain 3A, chloroplastic protein | Length: 123

No structure alignment results are available for 4MKV.S, 4MKV.T, 4MKV.U, 4MKV.V explicitly.

These chains are represented by chain 1WDD.s which has more than 70% sequence identity.

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View how chain 4MKV.V compares with the representative chain d1wdds_. Select a comparison method:


References