Structural Similarities for the Entities in PDB 4KV5

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C,D

Description: Transforming growth factor beta-1 proprotein protein | Length: 112

No structure alignment results are available for 4KV5.A, 4KV5.B, 4KV5.C, 4KV5.D explicitly.

These chains are represented by chain 2TGI.a which has more than 70% sequence identity.

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View how chain 4KV5.D compares with the representative chain d2tgia_. Select a comparison method:


Entity #2 | Chains E,G,H,J

Description: Single-chain variable fragment GC1009 protein | Length: 252

No structure alignment results are available for 4KV5.E, 4KV5.G, 4KV5.H, 4KV5.J explicitly.

These chains are represented by chain 4NZU.L which has more than 50% sequence identity.

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View how chain 4KV5.J compares with the representative chain PDP:4NZULa. Select a comparison method:


References