Structural Similarities for the Entities in PDB 4KRM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C,E,G,I,K

Description: Epidermal growth factor receptor protein | Length: 214

No structure alignment results are available for 4KRM.A, 4KRM.C, 4KRM.E, 4KRM.G, 4KRM.I, 4KRM.K explicitly.

These chains are represented by chain 3P0Y.A which has more than 95% sequence identity.

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Entity #2 | Chains B,D,F,H,J,L

Description: Nanobody/VHH domain 7D12 protein | Length: 133

No structure alignment results are available for 4KRM.B, 4KRM.D, 4KRM.F, 4KRM.H, 4KRM.J, 4KRM.L explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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References