Structural Similarities for the Entities in PDB 4JZN

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,C,I

Description: Anti-HCV E2 Fab HC84-1 heavy chain protein | Length: 261

No structure alignment results are available for 4JZN.A, 4JZN.C, 4JZN.I explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #2 | Chains B,D,P

Description: Anti-HCV E2 Fab HC84-1 light chain protein | Length: 215

No structure alignment results are available for 4JZN.B, 4JZN.D, 4JZN.P explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 4JZN.P compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains K

Description: Envelope glycoprotein E2 protein | Length: 13

This entity is too short to be considered for the all vs. all structure alignments.


References