Structural Similarities for the Entities in PDB 4JM2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A

Description: PGT 135 Heavy chain protein | Length: 236

No structure alignment results are available for 4JM2.A explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #2 | Chains B

Description: PGT 135 Light chain protein | Length: 214

No structure alignment results are available for 4JM2.B explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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Entity #3 | Chains C

Description: 17b Light chain protein | Length: 214

No structure alignment results are available for 4JM2.C explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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Entity #4 | Chains D

Description: 17b Heavy chain protein | Length: 229

No structure alignment results are available for 4JM2.D explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains E

Description: gp120 protein | Length: 321

No structure alignment results are available for 4JM2.E explicitly.

It is represented by chain 2NXY.a which has more than 70% sequence identity.

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Entity #6 | Chains F

Description: T-cell surface glycoprotein CD4 protein | Length: 185

No structure alignment results are available for 4JM2.F explicitly.

It is represented by chain 4H8W.C which is 100% sequence identical.

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References