Structural Similarities for the Entities in PDB 4JGS

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C,D,E,F,G,H,I

Description: MLV-related proviral Env polyprotein protein | Length: 105

No structure alignment results are available for 4JGS.A, 4JGS.B, 4JGS.C, 4JGS.D, 4JGS.E, 4JGS.F, 4JGS.G, 4JGS.H, 4JGS.I explicitly.

These chains are represented by chain 4JF3.A which has more than 40% sequence identity.

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View how chain 4JGS.I compares with the representative chain PDP:4JF3Aa. Select a comparison method: